Sequence
atgc intronic sequence ATGC exonic sequencegtttaattttcattacatatatcaactatgtgtacttttaatgcttcccattggtttaatttccatttgatgctttttgtagAATGGTGAATTTCCAAATGATGCGGGTGTTATACCGAGAGCTGTTCGGCAAATTTTTGATATACTAGAAGCTCAAAATGCCGAGTATAGCATGAAAGTTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g03810.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA11G15520.2 (Glycine max), 3'ss of exon 3
--gtttaattttcattacatatatcaactatgtgtacttttaatgcttcccattggtttaatt-tccatttgatgctttttg--------tagAATGGTGAATTTCCAAATGATGCGGGTGTTATACCGAGAGCTGTTCGGCAAATTTTTGATATACTAGAAGCTCAAAATGCCGAGTATAGCATGAAAGTTA
||| |||| | | | ||| | || ||||| || | |||| | ||| || |||||| |||||||| || ||||| | |||||| ||||| || || |||||||| || |||||||||||| |||||||||| ||||||||||||||||||||||| |
gttattacttttggccagcattggtatttatagtatttcttgttgctttgtgctgaatcaattctttgattggtgttttttggttatgtttagAATGGAGAGTTTCCGAGTGATGCTGGTGTCATCCCAAGAGCTGTGAAACAGATTTTTGATATATTAGAAGCTCAGAATGCCGAGTATAGCATGAAAGTGA
upper sequence: Vv06s0004g03810.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA12G07910.1 (Glycine max), 3'ss of exon 3
--gtttaattttcattacatatatcaactatgtgtacttttaatgcttcccattggtttaatttccatttg-atgctttt-----tgtagAATGGTGAATTTCCAAATGATGCGGGTGTTATACCGAGAGCTGTTCGGCAAATTTTTGATATACTAGAAGCTCAAAATGCCGAGTATAGCATGAAAGTTA
||| |||| | | | ||| | || ||||| || | || | | || || |||| |||||||||| || ||||| | |||||| ||||| ||||| ||||| || || |||||||| ||| |||||||||| ||||||||||||||||||||||| |
gttattacttttggccagcattgctatttatagtatttcttgttgctttgtgctgaatctgttcctttctgtgtgtttttgtttatgtagAATGGAGAGTTTCCTAGTGATGCTGGTGTCATACCAAGAGCCGTGAAACAGATTTTTGACATATTAGAAGCTCAGAATGCCGAGTATAGCATGAAAGTAA
upper sequence: Vv06s0004g03810.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA15G04830.1 (Glycine max), 3'ss of exon 3
gtt-taattttcattacatatatcaactatg-tgtacttttaatgcttcccattgg--tttaatttcca-tttgatgctt---tttgtagAATGGTGAATTTCCAAATGATGCGGGTGTTATACCGAGAGCTGTTCGGCAAATTTTTGATATACTAGAAGCTCAAAATGCCGAGTATAGCATGAAAGTTA
||| | | ||| |||| |||| ||| | || ||||| |||| | || ||| |||| | ||| | || ||||||| |||||||| | |||||| ||||| || || |||||||| ||| |||||||||||| | |||||||| ||||| ||||||| ||||||||| |
gttattcgtgtcacctcataggctccttatggtgttttcctattgctttttattgaaatctatttttttctttgcttcttgattctgcagAATGGCGAATTTCCGAGTGATGCTGGTGTCATCCCAAGAGCTGTGAAGCAGATTTTTGATATATTGGAAGCTCAGAATGCTGAGTATAACATGAAAGTAA
upper sequence: Vv06s0004g03810.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G40580.1 (Glycine max), 3'ss of exon 4
gtttaattttcattacatatatcaactatgtgtacttttaatgcttcccattgg---tttaatttccatttgatgcttt-----------ttgtagAATGGTGAATTTCCAAATGATGCGGGTGTTATACCGAGAGCTGTTCGGCAAATTTTTGATATACTAGAAGCTCAAAATGCCGAGTATAGCATGAAAGTTA
| ||| |||| || | || | | | | | | ||||| |||| ||| | || |||| | |||| || ||||||| |||||||| | |||||| ||||| || || |||||||| || |||||||||||| | |||||||| ||||| ||||||| ||||||||| |
--gttattcatgttacctaactaaagtcttcatg-tctcattgctttgtattgaaattttgaaatctatttcttactttgctacttgattctgcagAATGGCGAATTTCCGAGTGATGCTGGTGTCATCCCAAGAGCTGTGAAACAGATTTTTGATATATTGGAAGCTCAGAATGCTGAGTATAACATGAAAGTAA
upper sequence: Vv06s0004g03810.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT3G45850.1 (Arabidopsis thaliana), 3'ss of exon 4
---gtttaattttcattacatatatca--actatgtgtacttttaatgc--ttcccattggttt----aatttccatttgatgctttttgtagAATGGTGAATTTCCAAATGATGCGGGTGTTATACCGAGAGCTGTTCGGCAAATTTTTGATATACTAGAAGCTCAAAATGCCGAGTATAGCATGAAAGTTA
| | | | | | || || | | ||| | || ||| || ||| | ||| || | | | |||| ||||||||||||||| || || | ||| || |||||||| || ||||||||| ||||||||| || ||| |||||||||| || || ||||||||||| || |
gttggctcctctaaaacgaacctaacatgattctgtatgattcagatgtatttgtcatggtttttaataaatagctacggttgctatttgtagAATGGTGAGTTCCCGAGTGACGCAGGTGTTATTCCAAGAGCTGTTAAGCAAATTTTCGACATATTAGAAGCTCAGGGGGCTGAATATAGCATGAAGGTCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgtgtacttttaatgcttcccattggtttaatttccatttgatgctttttgtagAATGGTGAATTTCCAAATGATGCGGGTGTTATACCGAGAGCTGTTCGGCAAATTTTTGATATACTAGAAGCTCAAAATGCCGAGTATAGCATGAAAGTTA
tgcttttt CT-rich tract
tttaatttccattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttaattttcattacatatatcaactatgtgtacttttaatgcttcccattggtttaatttccatttgatgctttttgtagAATGGTGAATTTCCAAATGATGCGGGTGTTATACCGAGAGCTGTTCGGCAAATTTTTGATATACTAGAAGCTCAAAATGCCGAGTATAGCATGAAAGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA