1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cctcaacaattagattatcttcatgcataacattgagaattcatcttatttggcttctggtttaatgtttcctaaagctttttactgcaaatcttattagGGTTTGGCATGAACTGCCTGTACTCGTGATTGTCAGTATGCTTGCCTACTTTTGTTTTCTCGAGCAGCTTCTG
species | Vitis vinifera |
transcript | Vv06s0004g02930.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGAAATAGTGGATCAAATGGAGCTCATCAGACAGAAGTTAATGGATACAG GGTTTGGCATGAACTGCCTGTACTCGTGATTGTCAGTATGCTTGCCTACTTEST: gi|37186072|gb|CF605425.1|CF605425
genomic: CGAAATAGTGGATCAAATAGAGCTCATCAGACAGAAGTTAATGGATACAGgcaagtgatt ... atcttattagGGTTTGGCATGAACTGCCTGTACTCGTGATTGTCAGTATGCTTGCCTACTT
EST: CGAAATAGTGGATCAAATAGAGCTCATCAGACAGAAGTTAATGGATACAG GGTTTGGCATGAACTGCCTGTACTCGTGATTGTCAGTATGCTTGCCTACTT
genomic: CGAAATAGTGGATCAAATAGAGCTCATCAGACAGAAGTTAATGGATACAGgcaagtgatt ... atcttattagGGTTTGGCATGAACTGCCTGTACTCGTGATTGTCAGTATGCTTGCCTACTT
ttatttggcttctggtttaatgtttcctaaagctttttactgcaaatcttattagGGTTTGGCATGAACTGCCTGTACTCGTGATTGTCAGTATGCTTGCCTACTTTTGTTTTCTCGAGCAGCTTCTG
tcctaaa putative branch site (score: 2)
tcttatt putative PPT
aaatcttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctcaacaattagattatcttcatgcataacattgagaattcatcttatttggcttctggtttaatgtttcctaaagctttttactgcaaatcttattagGGTTTGGCATGAACTGCCTGTACTCGTGATTGTCAGTATGCTTGCCTACTTTTGTTTTCTCGAGCAGCTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
cctcaac
- - - - - - - - - - tcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - -cttctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttcc