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gtaagatgttagacttaggtttctgtcaaatttaaatgggaataaacaaaaagtgggctcttctgatggaatgtttaatgttttagGTTGCCAGATGGTTCTTTGATGGAGATCACCAAAATATATCCTTTGGATGCAGTTTATGACACCCTTGAGGATGTACCTGAAGAT
species | Vitis vinifera |
transcript | Vv06s0004g01310.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACATTTTTGAAACCAGCCTACGGCGTGGGAAGTTTGATGAATCACGCGT GTTGCCAGATGGTTCTTTGATGGAGATCACCAAAATATATCCTTTGGATGCEST: gi|349827600|gb|FQ422468.1|FQ422468
genomic: AACATTTTTGAAACCAGCCTACGGCGTGGGAAGTTTGATGAATCACGCGTgtaagatgtt ... aatgttttagGTTGCCAGATGGTTCTTTGATGGAGATCACCAAAATATATCCTTTGGATGC
EST: AACATTTTTGAAACCAGCCTACGGCGTGGGAAGTTTGATGAATCACGCGT GTTGCCAGATGGTTCTTTGATGGAGATCACCCAAATATAEST: gi|349828693|gb|FQ418428.1|FQ418428
genomic: AACATTTTTGAAACCAGCCTACGGCGTGGGAAGTTTGATGAATCACGCGTgtaagatgtt ... aatgttttagGTTGCCAGATGGTTCTTTGATGGAGATCACCAAAATATA
EST: AACATTTTTGAAACCAGCCTACGGCGTGGGAAGTTTGATGAATCACGCGT GTTGCCAGATGGTTCTTTGATGGAGATCACCAAAATATATCCCTTTGGATGEST: gi|351043798|gb|FQ431350.1|FQ431350
genomic: AACATTTTTGAAACCAGCCTACGGCGTGGGAAGTTTGATGAATCACGCGTgtaagatgtt ... aatgttttagGTTGCCAGATGGTTCTTTGATGGAGATCACCAAAATATATCC-TTTGGATG
EST: AACATTTTTGAAACCAGCCTACGGCGTGGGAAGTTTGATGAATCACGCGT GTTGCCAGATGGTTCTTTGATGGAGATCACCAAAATATATCCTTTGGATGC
genomic: AACATTTTTGAAACCAGCCTACGGCGTGGGAAGTTTGATGAATCACGCGTgtaagatgtt ... aatgttttagGTTGCCAGATGGTTCTTTGATGGAGATCACCAAAATATATCCTTTGGATGC
ttaaatgggaataaacaaaaagtgggctcttctgatggaatgtttaatgttttagGTTGCCAGATGGTTCTTTGATGGAGATCACCAAAATATATCCTTTGGATGCAGTTTATGACACCCTTGAGGATGTACCTGAAGAT
aatgtttaatgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatgttagacttaggtttctgtcaaatttaaatgggaataaacaaaaagtgggctcttctgatggaatgtttaatgttttagGTTGCCAGATGGTTCTTTGATGGAGATCACCAAAATATATCCTTTGGATGCAGTTTATGACACCCTTGAGGATGTACCTGAAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA