Sequence
atgc intronic sequence ATGC exonic sequencegtaatttctcaattgactaatagtgtttcctttctgttttctttttaattgcttctattattatttaacttaaattttgtggatgtagTTTCATGATGACATGAGCTTGCCATGTGGGGTGCTCCGTCTTCACCACAAAGGAGGCCATGGAAACCACAATGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g00560.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G12110.1 (Glycine max), 3'ss of exon 5
----gtaatttctcaattgactaatagtgtttcctttctgttttctttttaattgcttctatta--ttatttaacttaaattttgtggatgtagTTTCATGATGACATGAGCTTGCCATGTGGGGTGCTCCGTCTTCACCACAAAGGAGGCCATGGAAACCACAATGG
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gtgagttatttcaca-tccatagattttcttttaagtatctaatcaatgaaaggtgtgctgttactttatttaatcatgtatttttggttgcagTTCCATGATGACATGAACTTGCCCTGTGGGGTGCTTCGTCTTCACGACAAAGGGGGTCATGGAAGTCACAAAGG
upper sequence: Vv06s0004g00560.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA05G28940.1 (Glycine max), 3'ss of exon 5
----gtaatttctcaattgactaatagtgtttcctttctgttttctttttaattgcttctattattatttaacttaaattttgtggatgtagTTTCATGATGACATGAGCTTGCCATGTGGGGTGCTCCGTCTTCACCACAAAGGAGGCCATGGAAACCACAATGG
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gtgagttattccatatcctaccttttcttttaagtatctaatcagtgataggtgtgctgtttctttatttaatcatgtatttttttttgcagTTCCATGATGACATGAACTTGCCTTGTGGGGTGCTTCGTCTTCATGACAAAGGGGGTCATGGAAGCCACAAAGG
upper sequence: Vv06s0004g00560.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT5G19830.1 (Arabidopsis thaliana), 3'ss of exon 4
-----------gtaatttctcaattga---ctaatagtgtttcctttctgttttctttttaattgcttctattattat--ttaacttaaattttgtggatgtagTTTCATGATGACATGAGCTTGCCATGTGGGGTGCTCCGTCTTCACCACAAAGGAGGCCATGGAAACCACAATGG
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gtaatcctattactgtttctggctcaaggcctaaccatccttacgata-gtgttttgccagaagacgtataattccattgttactctggggtttggtgatgtagGTTCATGATGACATGCAATTGCCATGTGGTGTTCTTCGTCTTCAAGAAAAAGGAGGCCATGGATGTCACAACGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgttttctttttaattgcttctattattatttaacttaaattttgtggatgtagTTTCATGATGACATGAGCTTGCCATGTGGGGTGCTCCGTCTTCACCACAAAGGAGGCCATGGAAACCACAATGG
atttaac putative branch site (score: 3)
ttctttttaattgctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatttctcaattgactaatagtgtttcctttctgttttctttttaattgcttctattattatttaacttaaattttgtggatgtagTTTCATGATGACATGAGCTTGCCATGTGGGGTGCTCCGTCTTCACCACAAAGGAGGCCATGGAAACCACAATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA