Sequence
atgc intronic sequence ATGC exonic sequencegtaagacttgtaacatgtattcttgtagtttacaaagaaccgtgcaatactttgacctattaaagtacctttgtggctgttgctgtcaatttatgaattaaatcgagtttggaaatgatttatgccttcttctatttgtttttaagggtgaaaatattgagagtacatcaatacttgcttgcagGTGTGAGGCCTTCTCAACATATCCTCGAACATATGATTTGATACATGCTCATGGAGTCTTCAGCATGTACATGGGCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0124g00530.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G346138_T01 (Zea mays), 3'ss of exon 4
gtaagacttgtaacatgtattcttgtagtttacaaagaaccgtgcaatactttgacctattaaagtacctttgtggctgttgctgtcaatttatgaattaaatcgagtttggaaatgatttatgccttcttctatttgtttttaagggtgaaaatattgagagtacatcaatacttgcttgcagGTGTGAGGCCTTCTCAACATATCCTCGAACATATGATTTGATACATGCTCATGGAGTCTTCAGCATGTACATGGGCAA
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----------------------------------------------------------------gtactgttaatgaaacctttttc--ttcttgaaataaactgac----------actcccaaactatacagtcagacatacaaaataactctccatgttgcttgttaata--tgtttccagGTGCGAGGCCTTCTCTACTTATCCACGAACATACGATCTGATACATGGTAATGGAATCTTCAGCTCCCATATTCACAA
upper sequence: Vv05s0124g00530.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G47710.1 (Glycine max), 3'ss of exon 4
gtaagacttgtaacatgtattcttgtagtttacaaagaaccgtgcaatactttgacctattaaagtacctttgtggctgttgctgtcaatttatgaattaaatcgagtttggaaatgatttatgccttcttctatttgtttttaagggtgaaaatattgagagtacatcaatac-ttgcttgcagGTGTGAGGCCTTCTCAACATATCCTCGAACATATGATTTGATACATGCTCATGGAGTCTTCAGCATGTACATGGGCAA
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------------------------------------------------------------------------------catattatttatcttca---tgcatatactttgtctctgttt---gcatttgagcatgtacttttgagattgaaa-taatgaaggaacaacattgccttgcttgcagGTGTGAGCCCTTTTCGACATACCCACGAACATATGACTTGATACATGCTAGTGGTGTATTCAGTATGTATATGGACAA
upper sequence: Vv05s0124g00530.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA18G53780.1 (Glycine max), 3'ss of exon 4
gtaagacttgtaacatgtattcttgtagtttacaaagaaccgtgcaatactttgacctattaaagtacctttgtggctgttgctgtcaatttatgaattaaatcgagtttggaaatgatttatgccttcttctatttgtttttaagggtgaaaatattgagagtacatcaatac-ttgcttgcagGTGTGAGGCCTTCTCAACATATCCTCGAACATATGATTTGATACATGCTCATGGAGTCTTCAGCATGTACATGGGCAA
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------------------------------------------------------------------------------------ttcattttttatcttcatgcatatactttgtctctgtttgcatctgagtatgtacttttgagattgaaa-taatgaaggaacaccattgccttgattgcagGTGTGAGCCCTTTTCGACATACCCACGAACATATGACTTGATACATGCTAGTGGTGTATTCAGTATGTATATGGACAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352764734|gb|FQ471794.1|FQ471794EST: ACTCTTGGGATTGTCTATGAGCGTGGCCTCATTGGAACTTACATGAACTG GTGTGAGGCCTTCTCAACATATCCTCGAACATATGATTTGATACATGCTCA
genomic: ACTCTTGGGATTGTCTATGAGCGTGGCCTCATTGGAACTTACATGAACTGgtaagacttg ... ttgcttgcagGTGTGAGGCCTTCTCAACATATCCTCGAACATATGATTTGATACATGCTCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttctatttgtttttaagggtgaaaatattgagagtacatcaatacttgcttgcagGTGTGAGGCCTTCTCAACATATCCTCGAACATATGATTTGATACATGCTCATGGAGTCTTCAGCATGTACATGGGCAA
cttgctt CT-rich tract
tttgtttttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagacttgtaacatgtattcttgtagtttacaaagaaccgtgcaatactttgacctattaaagtacctttgtggctgttgctgtcaatttatgaattaaatcgagtttggaaatgatttatgccttcttctatttgtttttaagggtgaaaatattgagagtacatcaatacttgcttgcagGTGTGAGGCCTTCTCAACATATCCTCGAACATATGATTTGATACATGCTCATGGAGTCTTCAGCATGTACATGGGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA