1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cccacattaccaccactgcaacacacatttcaaacccatacacacatacaaacacaaaataaaagaagaatcttgtctgaaattgcctcttattgtacagGTGACCATAAACTATCTATTAGGGAATTTGGGAAGGAAATACTCTCATACAGTTGGAGTGGTTGATCTTGGAGGTGGTTCTGTTCAAATGGCATATGCCA
species | Vitis vinifera |
transcript | Vv05s0094g01630.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGAATGGGTCACCGTCTTAGATGGATCGCAAGAAGGTGCTTTTCAGTGG GTGACCATAAACTATCTATTAGGGAATTTGGGAAGGAAATACTCTCTTACAEST: gi|110372081|gb|EC936226.1|EC936226
genomic: CAGAATGGGTCACCGTCTTAGATGGATCGCAAGAAGGTGCTTTTCAGTGGgtaagtcttg ... tattgtacagGTGACCATAAACTATCTATTAGGGAATTTGGGAAGGAAATACTCTCATACA
EST: CAGAATGGGTCACCGTCTTAGATGGATCGCAAGAAGGTGCTTTTCAGTGG GTGACCATAAACTATCTATTAGGGAATTTGGGAAGGAAATACTCTCATACAEST: gi|71869640|gb|DT018695.1|DT018695
genomic: CAGAATGGGTCACCGTCTTAGATGGATCGCAAGAAGGTGCTTTTCAGTGGgtaagtcttg ... tattgtacagGTGACCATAAACTATCTATTAGGGAATTTGGGAAGGAAATACTCTCATACA
EST: CAGAATGGGTCACCGTCTTAGATGGATCGCAAGAAGGTGCTTTTCAGTGG GTGACCATAAACTATCTATTAGGGAATTTGGGAAGGAAATACTCTCATACA
genomic: CAGAATGGGTCACCGTCTTAGATGGATCGCAAGAAGGTGCTTTTCAGTGGgtaagtcttg ... tattgtacagGTGACCATAAACTATCTATTAGGGAATTTGGGAAGGAAATACTCTCATACA
atacaaacacaaaataaaagaagaatcttgtctgaaattgcctcttattgtacagGTGACCATAAACTATCTATTAGGGAATTTGGGAAGGAAATACTCTCATACAGTTGGAGTGGTTGATCTTGGAGGTGGTTCTGTTCAAATGGCATATGCCA
ttgcctctt CT-rich tract
aaaataaaagaagaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccacattaccaccactgcaacacacatttcaaacccatacacacatacaaacacaaaataaaagaagaatcttgtctgaaattgcctcttattgtacagGTGACCATAAACTATCTATTAGGGAATTTGGGAAGGAAATACTCTCATACAGTTGGAGTGGTTGATCTTGGAGGTGGTTCTGTTCAAATGGCATATGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
cccacat
- - - - accacca
- - - - - - - - - caacaca
- - - - - - - - - - - - - - - - - -ccataca
- - - - - - - - - - - - - - - - - - - - - - - - caaacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcctct