Sequence
atgc intronic sequence ATGC exonic sequencegtcagggacttgatcatttggcatgggttttgaatgtaagttccaccttttaacatttcctaacatatctactattgattacagGCTATTGAACTAGATCCTGGGTTTTCCAAAAACATTGGGCAGATTGTTCTTCTTGGTGGTGCTTTTGCTGTAAATGGGAATGTGAATCCAGCAGCTGAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0094g01420.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA20G00200.1 (Glycine max), 3'ss of exon 4
gtcagggacttg-atcatttggca----tgggttttgaatgtaagttccac-cttttaacatttcctaacatatctactattgattacagGCTATTGAACTAGATCCTGGGTTTTCCAAAAACATTGGGCAGATTGTTCTTCTTGGTGGTGCTTTTGCTGTAAATGGGAATGTGAATCCAGCAGCTGAGG
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gtatgatatatgtactatatcgcaataaggcattttcatgttaagcttcatactgttttcatta--tgaca-ataaaatattt-ttgcagGCTATACAGCTGGATCCAGAATTTGCTAACAACATTGGGCAGATTGTTCTTCTTGGTGGTGCTTTTGCAGTAAATGGCAATGTGAATCCCGCTGCTGAAG
upper sequence: Vv05s0094g01420.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA0048S00280.2 (Glycine max), 3'ss of exon 4
----gtcagggacttgatcatttggcatgggttttgaatgtaagttccaccttttaacatttcctaacatatctactat-tgattacagGCTATTGAACTAGATCCTGGGTTTTCCAAAAACATTGGGCAGATTGTTCTTCTTGGTGGTGCTTTTGCTGTAAATGGGAATGTGAATCCAGCAGCTGAGG
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gtatgatatatgtacaattctgcaatatggcattttcatgttactctt--catactgtttttcatgatgacgataatatatgtttgcagGCTATACAGCTGGATCCGGAATTTGCTAAGAACATTGGGCAGATTCTGATTCTTGGTGGTGCTTTTGCAGTAAATGGCAATGTGAATCCAGCTGCTGAAG
upper sequence: Vv05s0094g01420.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G05620.2 (Arabidopsis thaliana), 3'ss of exon 3
gtcagggacttgatcatttggcat----gggttttgaatgtaagtt---ccaccttttaacatttcctaacatatct-acta--ttgat--tacagGCTATTGAACTAGATCCTGGGTTTTCCAAAAACATTGGGCAGATTGTTCTTCTTGGTGGTGCTTTTGCTGTAAATGGGAATGTGAATCCAGCAGCTGAGG
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--gtaagactttctcatccgcaatttttatattccggttcttacttatctctgttcctatcatcttatcggagatttcattaccttgataatgcagGCTGTTCAGCTTGATCCAGAGTTTTCGAAAAATGTCGGACAAATTGTTCTTCTTGGTGGAGCATTTGCAGTAAACGGAAATGTAAATCCAGCTTCGGAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718301|gb|FC064762.1|FC064762EST: CTGGAAAAGTCACAGTGGTGGCTCTGGGTCCACTTACAAATATTGCACTG GCTATTGAACTAGATCCTGGGTTTTCCAAAAACATTGGGCAGATTGTTCTT
genomic: CTGGAAAAGTCACAGTGGTGGCACTGGGTCCACTTACAAATATTGCACTGgtcagggact ... ttgattacagGCTATTGAACTAGATCCTGGGTTTTCCAAAAACATTGGGCAGATTGTTCTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgaatgtaagttccaccttttaacatttcctaacatatctactattgattacagGCTATTGAACTAGATCCTGGGTTTTCCAAAAACATTGGGCAGATTGTTCTTCTTGGTGGTGCTTTTGCTGTAAATGGGAATGTGAATCCAGCAGCTGAGG
ttttaacattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcagggacttgatcatttggcatgggttttgaatgtaagttccaccttttaacatttcctaacatatctactattgattacagGCTATTGAACTAGATCCTGGGTTTTCCAAAAACATTGGGCAGATTGTTCTTCTTGGTGGTGCTTTTGCTGTAAATGGGAATGTGAATCCAGCAGCTGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA