1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgtcgctgtcatggccaccgcacatgcttagtacaaatattatttatgtcaacagaataattgataagagatgaggtgttttatgtcggtaaacgaacagGTGGAGGGTCTTATTCGGTTGATGGAAGGGGAACATGTTGGTCCTTTCAACCTTGGCAACCCTGGGGAATTCACCATGCTTGAACTCGCCCAG
species | Vitis vinifera |
transcript | Vv05s0077g02300.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
atgtcaacagaataattgataagagatgaggtgttttatgtcggtaaacgaacagGTGGAGGGTCTTATTCGGTTGATGGAAGGGGAACATGTTGGTCCTTTCAACCTTGGCAACCCTGGGGAATTCACCATGCTTGAACTCGCCCAG
aattgat putative branch site (score: 4)
agaataattgataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtcgctgtcatggccaccgcacatgcttagtacaaatattatttatgtcaacagaataattgataagagatgaggtgttttatgtcggtaaacgaacagGTGGAGGGTCTTATTCGGTTGATGGAAGGGGAACATGTTGGTCCTTTCAACCTTGGCAACCCTGGGGAATTCACCATGCTTGAACTCGCCCAG
- - -ctgtcat
- - - - - - -gccaccg
- - - - - - - - - - cacatgc
- - - - - - - - - - - - - - - - acaaata
- - - - - - - - - - - - - - - - - - - - - - - - - aacagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taagaga