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gtttagtttcctatcattttcatgtataaggacaatgtcactgttattttggggtaactctcttccttatagtatgaagtttgagtcacattattttcctacagGATCTGGACTATCAAGCTCTGCGGCATTTGTTTGCTCATCTATGATTGCTATAATGGCTGCTTATGATGTCAGCTTCCCAAAG
species | Vitis vinifera |
transcript | Vv05s0077g00690.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGTGTACCAGTTGGACTTGATGTCCTTATTGATGGCACAGTTCCTACAG GATCTGGACTATCAAGCTCTGCGGCATTTGTTTGCTCATCTATGATTGCTAEST: gi|110723631|gb|EE101165.1|EE101165
genomic: TGGTGTACCAGTTGGACTTGATGTCCTTATTGATGGCACGGTTCCTACAGgtttagtttc ... tttcctacagGATCTGGACTATCAAGCTCTGCGGCATTTGTTTGCTCATCTATGATTGCTA
EST: TGGTGTACCAGTTGGACTTGATGTCCTTATTGATGGCACAGTTCCTACAG GATCTGGACTATCAAGCTCTGCGGCATTTGTTTGCTCATCTATGATTGCTAEST: gi|71863613|gb|DT012668.1|DT012668
genomic: TGGTGTACCAGTTGGACTTGATGTCCTTATTGATGGCACGGTTCCTACAGgtttagtttc ... tttcctacagGATCTGGACTATCAAGCTCTGCGGCATTTGTTTGCTCATCTATGATTGCTA
EST: TGGTGTACCAGTTGGACTTGATGTCCTTATTGATGGCACGGTTCCTACAG GATCTGGACTATCAAGCTCTEST: gi|33405936|gb|CF211563.1|CF211563
genomic: TGGTGTACCAGTTGGACTTGATGTCCTTATTGATGGCACGGTTCCTACAGgtttagtttc ... tttcctacagGATCTGGACTATCAAGCTCT
EST: TGGTGTACCAGTTGGACTTGATGTCCTTATTGATGGCACGGTTCCTACAG GATCTGGACTATCAAGCTCTGCGGCATTTGTTTGCTCATCTATGATTGCTAEST: gi|77581517|gb|DV219710.1|DV219710
genomic: TGGTGTACCAGTTGGACTTGATGTCCTTATTGATGGCACGGTTCCTACAGgtttagtttc ... tttcctacagGATCTGGACTATCAAGCTCTGCGGCATTTGTTTGCTCATCTATGATTGCTA
EST: TGGTGTACCAGTTGGACTTGATGTCCTTATTGATGGCACAGTTCCTACAG GATCTGGACTATCAAGCTCTGCGGCATTTGTTTGCTCATCTATGATTGCTA
genomic: TGGTGTACCAGTTGGACTTGATGTCCTTATTGATGGCACGGTTCCTACAGgtttagtttc ... tttcctacagGATCTGGACTATCAAGCTCTGCGGCATTTGTTTGCTCATCTATGATTGCTA
tggggtaactctcttccttatagtatgaagtttgagtcacattattttcctacagGATCTGGACTATCAAGCTCTGCGGCATTTGTTTGCTCATCTATGATTGCTATAATGGCTGCTTATGATGTCAGCTTCCCAAAG
gggtaac putative branch site (score: 3)
ttattttcct putative PPT
acattatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttagtttcctatcattttcatgtataaggacaatgtcactgttattttggggtaactctcttccttatagtatgaagtttgagtcacattattttcctacagGATCTGGACTATCAAGCTCTGCGGCATTTGTTTGCTCATCTATGATTGCTATAATGGCTGCTTATGATGTCAGCTTCCCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT