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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgaaattcatgttaatgaattaaaattataaatttgtctcagtggattaagatgctgattgctccctcaccagGTGTGAATTTGGGGCTCTTTTGGCCTACTTTTACTTATGTGATCGTACAAATCTCTTTGGTGACTCCAAAAAG

Basic information

species Vitis vinifera
transcript Vv05s0077g00620.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122690927|gb|EC963161.1|EC963161
EST:     CTTGATTGAATACCGATTGACACTGAGAGCCAT                         GTGTGAATTTGGGGCTCTTTTGGCCTACTTTTACTTATGTGATCGTACAAA
genomic: CTTGATTGAATACCGATTGACACTGAGAGCCATgtaagtgaaa ... ccctcaccagGTGTGAATTTGGGGCTCTTTTGGCCTACTTTTACTTATGTGATCGTACAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaaaattataaatttgtctcagtggattaagatgctgattgctccctcaccagGTGTGAATTTGGGGCTCTTTTGGCCTACTTTTACTTATGTGATCGTACAAATCTCTTTGGTGACTCCAAAAAG
                                  tgctgat  putative branch site (score: 3)
                                        ttgctccctc  CT-rich tract
     aattataaatttgtct  TA-rich tract