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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtggaggagatgccaacttgaaatttattctgatcaaatatttggtattgcatgtacacttgctcatttctcatcattgggattttgtagGAAGACCTAGAGAATTCATTACTAAGTGCTTCCAACCAGCAGAACCGGTTAAACCCTGCCTTCAGACAGGGGGATATTCAG

Basic information

species Vitis vinifera
transcript Vv05s0062g00220.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349822773|gb|FQ398160.1|FQ398160
EST:     TGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGNNNNNNNCAGAAAA                         GAAGACCTAGAGAATTCATTACTAAGTGCTTCCAACCAGCAGAACCGGTTA
genomic: TGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGTTTTTTTCAGAAAAgttagtggag ... gattttgtagGAAGACCTAGAGAATTCATTACTAAGTGCTTCCAACCAGCAGAACCGGTTA
EST: gi|349816841|gb|FQ399709.1|FQ399709
EST:     TGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGNNNNNNNCAGAAAA                         GAAGACCTAGAGAATTCATTACTAAGTGCTTCCAACCAGCAGAACCGGTTA
genomic: TGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGTTTTTTTCAGAAAAgttagtggag ... gattttgtagGAAGACCTAGAGAATTCATTACTAAGTGCTTCCAACCAGCAGAACCGGTTA
EST: gi|110412506|gb|EC978256.1|EC978256
EST:     TGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGNNNNNNNCAGAAAA                         GAAGACCTAGAGAATTCATTACTAAGTGCTTCCAACCAGCAGAACCGGTTA
genomic: TGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGTTTTTTTCAGAAAAgttagtggag ... gattttgtagGAAGACCTAGAGAATTCATTACTAAGTGCTTCCAACCAGCAGAACCGGTTA
EST: gi|349819759|gb|FQ402696.1|FQ402696
EST:     GATACTGCAGAGCCAAGACAAGAAAATATCGGCCAGNNNNNNNCAGAAAA                         GAAGACCTAGAGAATTCATTACTAAGTGCTTCCAAACAGCAGAACCGGTTA
genomic: GATACTGCAGAGCCAAGACAAGAAA-TATCGGCCAGTTTTTTTCAGAAAAgttagtggag ... gattttgtagGAAGACCTAGAGAATTCATTACTAAGTGCTTCCAACCAGCAGAACCGGTTA
EST: gi|110708560|gb|EE086241.1|EE086241
EST:     ACTGCAGAGCCAA-A-AAGAAGAATATCGGGCCAGTTTTTGTT-AGAAAA                         GAAGAACTANAGAATTCATTACTAA
genomic: ACTGCAGAGCCAAGACAAGAA-A-TATCGG-CCAGTTTTT-TTCAGAAAAgttagtggag ... gattttgtagGAAGACCTAGAGAATTCATTACTAA
EST: gi|110417406|gb|EC983458.1|EC983458
EST:     TGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGNNNNNNNCAGAAAA                         GAAGACCTAGAGAATTCATTACTAAGTGCTTCCAACCAGCAGAACCGGTTA
genomic: TGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGTTTTTTTCAGAAAAgttagtggag ... gattttgtagGAAGACCTAGAGAATTCATTACTAAGTGCTTCCAACCAGCAGAACCGGTTA
EST: gi|349830095|gb|FQ420355.1|FQ420355
EST:     TGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGNNNNNNNCAGAAAA                         GAAGACCTAGAGAATTCATTACTAAGTGCTTCCAACCAGCAGAACCGGTTA
genomic: TGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGTTTTTTTCAGAAAAgttagtggag ... gattttgtagGAAGACCTAGAGAATTCATTACTAAGTGCTTCCAACCAGCAGAACCGGTTA
EST: gi|110687203|gb|EE064406.1|EE064406
EST:     TGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGNNNNNNNCAGAAAA                         GAAGACCTAGAGAATTCATTACTAAGTGCTTCCAACCAGCA
genomic: TGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGTTTTTTTCAGAAAAgttagtggag ... gattttgtagGAAGACCTAGAGAATTCATTACTAAGTGCTTCCAACCAGCA
EST: gi|161718396|gb|FC064783.1|FC064783
EST:     TGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGTTTTTT-CAGAAAA                         GAAGACCTAGAGAAT-CATTACTAAGTGCTTCCA-CCAG
genomic: TGATACTGCAGAGCCAAGACAAGAAATATCGGCCAGTTTTTTTCAGAAAAgttagtggag ... gattttgtagGAAGACCTAGAGAATTCATTACTAAGTGCTTCCAACCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatatttggtattgcatgtacacttgctcatttctcatcattgggattttgtagGAAGACCTAGAGAATTCATTACTAAGTGCTTCCAACCAGCAGAACCGGTTAAACCCTGCCTTCAGACAGGGGGATATTCAG
                                              attttgta  TA-rich tract