1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...agaatggttttatgacaatgcatacttgtctacgttgtctctgtggtttattttgtttctgttacacatagatctgatcccttatttttgatgatttcagGTACCACCTGTGCCACAGTCCTTACCCGAGCAATATTTACTGAAGGGTGCAAGTCGGTTGCTGCTGGAATGAATGCAATGGACCTAAGAAGGGGTATCTC
species | Vitis vinifera |
transcript | Vv05s0051g00340.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGCCTTGTGAAACAGGTTGCAAATGCCACTAATGATGTAGCAGGAGATG GTACCACCTGTGCCACAGTCCTTACCCGAGCAATATTTACTGAAGGGTGCAEST: gi|30300026|gb|CB976820.1|CB976820
genomic: AAGCCTTGTGAAACAGGTTGCAAATGCCACTAATGATGTAGCAGGAGATGgtaagttttc ... atgatttcagGTACCACCTGTGCCACAGTCCTTACCCGAGCAATATTTACTGAAGGGTGCA
EST: AAGCCTTGTGAAACAGGTTGCAAATGCCACTAATGATGTAGCAGGAGATG GTACCACCTGTGCCACAGTCCTTACCCGAGCAATATTTACTGAAGGGTGCAEST: gi|110690897|gb|EE068383.1|EE068383
genomic: AAGCCTTGTGAAACAGGTTGCAAATGCCACTAATGATGTAGCAGGAGATGgtaagttttc ... atgatttcagGTACCACCTGTGCCACAGTCCTTACCCGAGCAATATTTACTGAAGGGTGCA
EST: AAGCCTTGTGAAACAGGTTGCAAATGCCACTAATGATGTAGCAGGAGATG GTACCACCTGTGCCACAGTCCTTACCCGAGCAATATTTACTGAAGGGTGCAEST: gi|110731644|gb|EE106246.1|EE106246
genomic: AAGCCTTGTGAAACAGGTTGCAAATGCCACTAATGATGTAGCAGGAGATGgtaagttttc ... atgatttcagGTACCACCTGTGCCACAGTCCTTACCCGAGCAATATTTACTGAAGGGTGCA
EST: AAGCCTTGTGAAACAGGTTGCAAATGCCACTAATGATGTAGCAGGAGATG GTACCACCTGTGCCACAGTCCTTACCCGAGCAATATTTACTGAAGGGTGCAEST: gi|71859121|gb|DT008176.1|DT008176
genomic: AAGCCTTGTGAAACAGGTTGCAAATGCCACTAATGATGTAGCAGGAGATGgtaagttttc ... atgatttcagGTACCACCTGTGCCACAGTCCTTACCCGAGCAATATTTACTGAAGGGTGCA
EST: AAGCCTTGTGAAACAGGTTGCAAATGCCACTAATGATGTAGCAGGAGATG GTACCACCTGTGCCACAGTCCTTACCCGAGCAATATTTACTGAAGGGTGCA
genomic: AAGCCTTGTGAAACAGGTTGCAAATGCCACTAATGATGTAGCAGGAGATGgtaagttttc ... atgatttcagGTACCACCTGTGCCACAGTCCTTACCCGAGCAATATTTACTGAAGGGTGCA
gtttattttgtttctgttacacatagatctgatcccttatttttgatgatttcagGTACCACCTGTGCCACAGTCCTTACCCGAGCAATATTTACTGAAGGGTGCAAGTCGGTTGCTGCTGGAATGAATGCAATGGACCTAAGAAGGGGTATCTC
ttttgat putative branch site (score: 4)
ttatttttgatgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaatggttttatgacaatgcatacttgtctacgttgtctctgtggtttattttgtttctgttacacatagatctgatcccttatttttgatgatttcagGTACCACCTGTGCCACAGTCCTTACCCGAGCAATATTTACTGAAGGGTGCAAGTCGGTTGCTGCTGGAATGAATGCAATGGACCTAAGAAGGGGTATCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - -caatgca
- - - - - - - - - - - - - - - - - -tgtctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatccc