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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatctgatctattacctgtatgagatactaaatgtggcatgcagcccattaatttcttttcccttttgtattttcccaaacagATGGGTATGAAAGAAGAAGATGAACTGGTTGATTCCTCAGATATCCTGGCACATATCAGTGGTGTGAACTCCTTCAAATGCACTTTTCCCATCCAATCCT

Basic information

species Vitis vinifera
transcript Vv05s0049g01830.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0049g01830.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G26990.1 (Glycine max), 3'ss of exon 3
-------------------------------------------------------gtaagatctgatctattacctgtatgagatactaaat------gtggcatgcagcccattaatttcttttcccttttgtattttcccaaacagATGGGTATGAAAGAAGAAGATGAACTGGTTGATTCCTCAGATATCCTGGCACATATCAGTGGTGTGAACTCCTTCAAATGCACTTTTCCCATCCAATCCT
                                                        ||  |    ||   ||| |  | | |  |  | |||       ||||||  |  |||| |   | | | || |    | |||   |   |||||   | |||||||||| |||||  |||||||||||||||||||| | |||||||||||||| |||||||| ||||||||||  | | |||||||     
gtaagattcccttaattggatacttttgttcaacttgccttagtctaaagttaaaatacaaaaaaattccttatcacttttaccttttcaattatttgatggcata-attccatgatgctatatcccttccattttttgtacttgcagATAATTGTGAAAGAAGATGATGATATGGTTGATTCCTCAGATATCTTTGCACATATCAGTGGAGTGAACTCTTTCAAATGCAACTATTCCATCCA-----

upper sequence: Vv05s0049g01830.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G33390.1 (Glycine max), 3'ss of exon 3
--------------------------------------gtaagatctgatctatt--acctgtatgagatactaaa---------tgtggcatgcagcccattaatttcttttcccttttgtattttc-ccaaacagATGGGTATGAAAGAAGAAGATGAACTGGTTGATTCCTCAGATATCCTGGCACATATCAGTGGTGTGAACTCCTTCAAATGCACTTTTCCCATCCAATCCT
                                        | ||  |  | ||||  || ||    || ||  |||         | |  | || | |   | ||||  ||     | | || ||||   |   ||| | | | ||||||| ||||||||  |||||||||||||||||||| | || ||||||||||| |||||||||||||||||||  | | || |||| ||||
gtaagatttccagggctcattcatttattaaacacttaacaggacattttttattcaacttgcccaagttaaaaaaaaaaatccctatcacttgtaccttgtcaattatttgctgatatagttttttaatcctgcagGTAGTTGTGAAAGATGAAGATGATATGGTTGATTCCTCAGATATCTTTGCTCATATCAGTGGGGTGAACTCCTTCAAATGCAACTATTCCTTCCAGTCCT

upper sequence: Vv05s0049g01830.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA20G34250.1 (Glycine max), 3'ss of exon 6
gtaagatct----gatctattacctgtatgagatactaaatgtggcatgcagcccatt-aatttcttttcccttttgtattttc-ccaaacagATGGGTATGAAAGAAGAAGATGAACTGGTTGATTCCTCAGATATCCTGGCACATATCAGTGGTGTGAACTCCTTCAAATGCACTTTTCCCATCCAATCCT
||||||| |    | |  ||| | | ||| | | ||| ||   | |  ||     ||| || |  || |   | | || ||||  ||   ||| | | ||||||||| ||||||||  |||||||||||||||||||| | || |||||||||||  ||||||||||||||||||  | | ||||||| ||||
gtaagatttccagggttcatt-catttattaaacacttaacaggac--gctttttattcaactatttgttgatatagttttttaaccctgcagGTAGTTATGAAAGATGAAGATGATATGGTTGATTCCTCAGATATCTTTGCTCATATCAGTGGGCTGAACTCCTTCAAATGCAACTATTCCATCCAGTCCT

upper sequence: Vv05s0049g01830.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA20G21380.1 (Glycine max), 3'ss of exon 5
---------------------------------------------------------------gtaagatctgat--ctattacctgtatgagatactaaatgtggcatgcagcccattaatttcttttcccttttgtatttt-cccaaacagATGGGTATGAAAGAAGAAGATGAACTGGTTGATTCCTCAGATATCCTGGCACATATCAGTGGTGTGAACTCCTTCAAATGCACTTTTCCCATCCAATCCT
                                                                 ||   | |||  || |||||| | | |  || |  |||  ||||  |   | || || |  | | ||||   | ||||   |   |||||   | |||||||||| |||||  |||||||||||||||||||| | ||||||||||| || |||||||| ||||||||||  | | ||||||| ||||
gtaagattcccttaatcggatactgttgttcaacttgccttagtctaaaaattaaaatacaaaaaaattcccgatcacttttaccttt-tcaattatttgatg--gcat--aattccttgatgttatattccttccattttttgtacttgcagATAATTGTGAAAGAAGATGATGATATGGTTGATTCCTCAGATATCTTTGCACATATCAGCGGAGTGAACTCTTTCAAATGCAACTATTCCATCCAGTCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaatgtggcatgcagcccattaatttcttttcccttttgtattttcccaaacagATGGGTATGAAAGAAGAAGATGAACTGGTTGATTCCTCAGATATCCTGGCACATATCAGTGGTGTGAACTCCTTCAAATGCACTTTTCCCATCCAATCCT
                    ttaatttcttttccct  CT-rich tract
                   attaatttctttt  TA-rich tract