1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagcactattgggtgtagtatggaacatgtactatatatactcgaggagagttcaatctattgtacccttcttttccaattgacttgcagGTACATGCCTGTGAATCTAGAGAACATCTTTAGCAAGTATGCCCAGACTGTGCCTGAGAAGTTGACGTTGGGAGAGCTCTGGAACATGACTGAGGGGAAT
species | Vitis vinifera |
transcript | Vv05s0049g01780.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGCAAATCCAAGCATGGGAGTGACTCCGGAACTTATGACACTGAAGGAAG GTACATGCCTGTGAATCTAGAGAACATCTTTAGCAAGTATGCCCAGACTGTEST: gi|27581814|gb|CB004509.1|CB004509
genomic: CACAAATCCAAGCATGGGAGTGACTCCGGAACTTATGACACTGAAGGAAGgtaagcacta ... tgacttgcagGTACATGCCTGTGAATCTAGAGAACATCTTTAGCAAGTATGCCCAGACTGT
EST: CACAAATCCAAGCATGGGAGTGACTCCGGAACTTATGACACTGAAGGAAG GTACATGCCTGTGAATCTAGAGAACATCTTTAGCAAGTATGCCCAGACTGTEST: gi|30305765|gb|CB982559.1|CB982559
genomic: CACAAATCCAAGCATGGGAGTGACTCCGGAACTTATGACACTGAAGGAAGgtaagcacta ... tgacttgcagGTACATGCCTGTGAATCTAGAGAACATCTTTAGCAAGTATGCCCAGACTGT
EST: CACAAATCCAAGCATGGGAGTGACTCCGGAACTTATGACACTGAAGGAAG GTACATGCCTGTGAATCTAGAGAACATCTTTAGCAAGTATGCCCAGACTGTEST: gi|29783233|gb|CB349272.2|CB349272
genomic: CACAAATCCAAGCATGGGAGTGACTCCGGAACTTATGACACTGAAGGAAGgtaagcacta ... tgacttgcagGTACATGCCTGTGAATCTAGAGAACATCTTTAGCAAGTATGCCCAGACTGT
EST: CACAAATCCAAGCATGGGAGTGACTCCGGAACTTATGACACTGAAGGAAG GTACATGCCTGTGAATCTAGAGAACATCTTTAGCAAGTATGCCCAGACTGTEST: gi|110400288|gb|EC966846.1|EC966846
genomic: CACAAATCCAAGCATGGGAGTGACTCCGGAACTTATGACACTGAAGGAAGgtaagcacta ... tgacttgcagGTACATGCCTGTGAATCTAGAGAACATCTTTAGCAAGTATGCCCAGACTGT
EST: CACAAATCCAAGCATGGGAGTGACTCCGGAACTTATGACACTGAAGGAAG GTACATGCCTGTGAATCTAGAGAACATCTTTAGCAAGTATGCCCAGACTGTEST: gi|30135359|gb|CB920697.1|CB920697
genomic: CACAAATCCAAGCATGGGAGTGACTCCGGAACTTATGACACTGAAGGAAGgtaagcacta ... tgacttgcagGTACATGCCTGTGAATCTAGAGAACATCTTTAGCAAGTATGCCCAGACTGT
EST: CACAAATCCAAGCATGGGAGTGACTCCGGAACTTATGACACTGAAGGAAG GTACATGCCTGTGAATCTAGAGAACATCTTTAGCAAGTATGCCCAGACTGTEST: gi|29782913|gb|CB348630.2|CB348630
genomic: CACAAATCCAAGCATGGGAGTGACTCCGGAACTTATGACACTGAAGGAAGgtaagcacta ... tgacttgcagGTACATGCCTGTGAATCTAGAGAACATCTTTAGCAAGTATGCCCAGACTGT
EST: CACAAATCCAAGCATGGGAGTGACTCCGGAACTTATGACACTGAAGGAAG GTACATGCCTGTGAATCTAGAGAACATCTTTAGCAAGTATGCCCAGACTGTEST: gi|29783277|gb|CB349356.2|CB349356
genomic: CACAAATCCAAGCATGGGAGTGACTCCGGAACTTATGACACTGAAGGAAGgtaagcacta ... tgacttgcagGTACATGCCTGTGAATCTAGAGAACATCTTTAGCAAGTATGCCCAGACTGT
EST: CACAAATCCAAGCATGGGAGTGACTCCGGAACTTATGACACTGAAGGAAG GTACATGCCTGTGAATCTAGAGAACATCTTTAGCAAGTATGCCCAGACTGT
genomic: CACAAATCCAAGCATGGGAGTGACTCCGGAACTTATGACACTGAAGGAAGgtaagcacta ... tgacttgcagGTACATGCCTGTGAATCTAGAGAACATCTTTAGCAAGTATGCCCAGACTGT
atatactcgaggagagttcaatctattgtacccttcttttccaattgacttgcagGTACATGCCTGTGAATCTAGAGAACATCTTTAGCAAGTATGCCCAGACTGTGCCTGAGAAGTTGACGTTGGGAGAGCTCTGGAACATGACTGAGGGGAAT
aattgac putative branch site (score: 3)
cccttcttttccaatt CT-rich tract
aatctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcactattgggtgtagtatggaacatgtactatatatactcgaggagagttcaatctattgtacccttcttttccaattgacttgcagGTACATGCCTGTGAATCTAGAGAACATCTTTAGCAAGTATGCCCAGACTGTGCCTGAGAAGTTGACGTTGGGAGAGCTCTGGAACATGACTGAGGGGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT