1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtcagcttgcaattgtaattccgtttggatgatggtttttccttctttccttttgggtgtttctgttaatacattttgtttctcctttttccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCACTGACAAGTTTGAGATGTGGGGAGATGGGCTGCAAACTCGGTCTTTCAC
species | Vitis vinifera |
transcript | Vv05s0020g04510.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGGAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTANGAAG-CCATCACATCCAEST: gi|351056646|gb|FQ443273.1|FQ443273
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|349823754|gb|FQ415165.1|FQ415165
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|77584261|gb|DV221202.1|DV221202
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|110724254|gb|EE099931.1|EE099931
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTANGAAGGCCATCACATCCAEST: gi|110712339|gb|EE089844.1|EE089844
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCNCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAAAGAGAAGGCTCCTGCTGCCAT-CTGTAAGAAGGCCATCACATCCEST: gi|110697772|gb|EE075142.1|EE075142
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGC-ATTCTGTAGGAAGGCCATCACATCC
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|351039352|gb|FQ461219.1|FQ461219
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACAGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|71870290|gb|DT019345.1|DT019345
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|71882666|gb|DT031721.1|DT031721
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: ATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|110362661|gb|EC926208.1|EC926208
genomic: ATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|110713058|gb|EE088647.1|EE088647
genomic: TAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAAGCTCCTGCTGCATTCTGTANGA-GGCCATC-CATCCAEST: gi|110710946|gb|EE087579.1|EE087579
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACCTGGAAAG GTGGGANAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|351053527|gb|FQ459274.1|FQ459274
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|110711807|gb|EE088704.1|EE088704
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|351023083|gb|FQ430958.1|FQ430958
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|110429041|gb|EC995528.1|EC995528
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|37188406|gb|CF607755.1|CF607755
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|30296895|gb|CB973689.1|CB973689
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|110710842|gb|EE087363.1|EE087363
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: CGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGNAAAG GTGG-AGAGAGAAGGCTCCTGCTGCATTCTGTANGAAGGCCATCACATCCEST: gi|77587013|gb|DV222647.1|DV222647
genomic: CGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGG-AAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCC
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|33409706|gb|CF215333.1|CF215333
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|30299290|gb|CB976084.1|CB976084
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|110688673|gb|EE067497.1|EE067497
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: CGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAAACATGGAA-G GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTANGAAAGGC-ATCACATCEST: gi|110688752|gb|EE067664.1|EE067664
genomic: CGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAA-CATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAA-GGCCATCACATC
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|110709756|gb|EE085496.1|EE085496
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAA GTGGGAAAGAGAAGGCTCCTGCCGCATTCTGTAAGAAGGCCATTC-CATCCEST: gi|110727892|gb|EE105171.1|EE105171
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCAT-CACATCC
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGC-ATCACATCCCEST: gi|77588003|gb|DV223206.1|DV223206
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|110699656|gb|EE076844.1|EE076844
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAAGCTCCTGCTGCATTCTGTAGGAAAGCCATCACATCCAEST: gi|77586407|gb|DV222325.1|DV222325
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|110711660|gb|EE088389.1|EE088389
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: CGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACAATGGAAAG GTTGGAGAGAAAAGGCTCCTGCTGCATTCTGTAAGAAGGC-ATCAC-TCCEST: gi|110701564|gb|EE079280.1|EE079280
genomic: CGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACA-TGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCC
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAAGCTCCTGCTGCATTCTGTANGAANGCCATCACATCCAEST: gi|351056774|gb|FQ443401.1|FQ443401
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|349826666|gb|FQ418757.1|FQ418757
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|110712020|gb|EE089165.1|EE089165
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACNGTTCCATAATATATATGGACCTTTTGGAACATGGNAAG GTGGGAGAGAGAAGGCCCCTGCTGCATTCTGTAGGAAAGC-ATCACATCCAEST: gi|110711140|gb|EE087341.1|EE087341
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|110711116|gb|EE087296.1|EE087296
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCGTTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAA GTGGGAAAGAAAAGGCTCCTGCTGCATTCTGTAGGAAAGCCATC-CATCCAEST: gi|33407870|gb|CF213497.1|CF213497
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: CA--NGATCCGGTTCCATAATATATATGGACCTTTTGGAACAT-GATCAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCEST: gi|110375283|gb|EC940257.1|EC940257
genomic: CATTGGA--CGGTTCCATAATATATATGGACCTTTTGGAACATGGA-AAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCC
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|110694519|gb|EE071694.1|EE071694
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: CGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|110361148|gb|EC924601.1|EC924601
genomic: CGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|110718172|gb|EE094701.1|EE094701
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAA GTGGGAGAGAGAAAGCTCCTGCTGCATTCTGTAGGAAGGCCAEST: gi|351055373|gb|FQ441971.1|FQ441971
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|110708471|gb|EE086048.1|EE086048
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGGCC-TCACATCCEST: gi|110692467|gb|EE071745.1|EE071745
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGG-CCATCACATCC
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|110713774|gb|EE089987.1|EE089987
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTANGAAG-CCATCACATCCAEST: gi|110361734|gb|EC925229.1|EC925229
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: GAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|110691490|gb|EE069648.1|EE069648
genomic: GAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTANGAAGGCCATCACATCCAEST: gi|352789795|gb|FQ478610.1|FQ478610
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGGTCCTGCTTGC-TTCTGTAGGAAGGCCACCACAEST: gi|351035857|gb|FQ463702.1|FQ463702
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCT-GCATTCTGTAGGAAGGCCATCACA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAAGCTCCTGCTGCATTCTGTAAGAAGGCCATCACAATCCEST: gi|110690440|gb|EE067539.1|EE067539
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACA-TCC
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|110397943|gb|EC963950.1|EC963950
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|110689288|gb|EE065379.1|EE065379
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|71867732|gb|DT016787.1|DT016787
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|110690011|gb|EE066739.1|EE066739
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGA-CATGGAAAG GTGGGAGAGAGAAG-CTCCTGCTGCATTCTGTAGGAAG-CCATCACATCCCEST: gi|351046356|gb|FQ452972.1|FQ452972
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|110706385|gb|EE081866.1|EE081866
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTANGAAGGCCATCACATCCAEST: gi|71890126|gb|DT039181.1|DT039181
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: ATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|110730002|gb|EE106582.1|EE106582
genomic: ATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GGTGGGAGAGAGAAG-CTCCTGCTGCATTCTGTANGAAG-CCATCACATCCEST: gi|110689401|gb|EE065591.1|EE065591
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagG-TGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCC
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGACCATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTANGAAGGCCATCACATCCAEST: gi|22013933|gb|BQ798967.1|BQ798967
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|87586940|gb|DY475007.1|DY475007
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|110359380|gb|EC920776.1|EC920776
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|30251726|gb|CB969459.1|CB969459
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCTAEST: gi|110710487|gb|EE086864.1|EE086864
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAAGCTCCTGCTGCATTCTGTAGGAAAGCCATCACATCCAEST: gi|110712797|gb|EE088155.1|EE088155
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: CGCATTGGACGGTTCCATAATATATATGGACCTTTTGGACCATGGAAAAG GTGGGAGAGAGAAAGCTCCTGCTGCATTCTGTANGAAG-CCATCACATCCEST: gi|351030340|gb|FQ432278.1|FQ432278
genomic: CGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAA-Ggtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCC
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|110702753|gb|EE079001.1|EE079001
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTANGAAG-CCATCACATCCAEST: gi|110429380|gb|EC995871.1|EC995871
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|110703437|gb|EE080280.1|EE080280
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: CGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACAATGGAA-G GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTANGAAGGCCATCACATCCEST: gi|110690995|gb|EE068593.1|EE068593
genomic: CGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACA-TGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCC
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|110711219|gb|EE087490.1|EE087490
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: CGCATTGGACGGTTCCATAATATATATGGACCTTTTTGGA-CATGGAAAG GTGGGAGAGAGAAAGCTCCTGCTGCATTCTGTANGAAG-CCATCACATCCAEST: gi|110711728|gb|EE088537.1|EE088537
genomic: CGCATTGGACGGTTCCATAATATATATGGACCTTTT-GGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: CGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGNAAAG GTGGGAGAGAGAANGCTCCTGCTGCATTCTGTANGAAGGC-ATCACATCCEST: gi|110701563|gb|EE079279.1|EE079279
genomic: CGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGG-AAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCC
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTANGAAAGGC-ATCACATCCEST: gi|110700929|gb|EE078013.1|EE078013
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAA-GGCCATCACATCC
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAAGC-ATCACATCCAEST: gi|110700605|gb|EE077416.1|EE077416
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCAEST: gi|351048894|gb|FQ449737.1|FQ449737
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCA
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTACGAAGGCCATCACEST: gi|110710987|gb|EE087668.1|EE087668
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCAC
EST: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACCTGGAAAG GTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAAGAAGGCCATCAC
genomic: TCGCATTGGACGGTTCCATAATATATATGGACCTTTTGGAACATGGAAAGgtcagcttgc ... tccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCAC
ctttccttttgggtgtttctgttaatacattttgtttctcctttttccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCACTGACAAGTTTGAGATGTGGGGAGATGGGCTGCAAACTCGGTCTTTCAC
tgttaat putative branch site (score: 3)
cattttgtttctcctt CT-rich tract
ttaatacattttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagcttgcaattgtaattccgtttggatgatggtttttccttctttccttttgggtgtttctgttaatacattttgtttctcctttttccattatagGTGGGAGAGAGAAGGCTCCTGCTGCATTCTGTAGGAAGGCCATCACATCCACTGACAAGTTTGAGATGTGGGGAGATGGGCTGCAAACTCGGTCTTTCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG