Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggatgagttgcagttttgtagtttttagttcccactctacctattaacccaggctttctaatttttactttatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAAAGAAAGGAGGAATGATTGTATTACCTGCTGGAATTTATCACCGGTTCAC

Basic information

species Vitis vinifera
transcript Vv05s0020g04080.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g04080.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA20G28860.2 (Glycine max), 3'ss of exon 4
--gtaggatgagttgcagttttgtagtt-tttagttcccactctacctattaacccaggctttctaat-ttttactttatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAAAGAAAGGAGGAATGATTGTATTACCTGCTGGAATTTATCACCGGTTCAC
   |    | | ||   | |||    |  |||  || ||||  | ||||  |    | | |    ||| | | |  ||    |  ||| ||||||||||| |||||||  |||||  ||||||| ||||||||| | |||||||||||||||||  | |||||||| ||||||||||| || || ||
gtatgaactaattttttgctttactttgattttcttgccaccttgcctaccattttaagttgctaaatatatcatgtttgtctttagGCTATTTTGATGTTAGGGATCGCAATGAAGCTTGGATTCGTGTGTGGGTCAAGAAAGGAGGAATGATCATCTTACCTGCCGGAATTTATCATCGCTTTAC

upper sequence: Vv05s0020g04080.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G38940.3 (Glycine max), 3'ss of exon 4
--gtaggatgagttgcagttttgtagtt-tttagttcccactctacctattaacccaggctttctaatttttactttatgg-tgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAAAGAAAGGAGGAATGATTGTATTACCTGCTGGAATTTATCACCGGTTCAC
    |   | | || | | |||    |  |||  || ||||  | ||||  |    | | |    ||| | | || | ||  |  ||| ||||||||||| ||||||   |||||  ||||||| || |||||| | |||||||||||||||||  | |||||||||||||||||||| || || ||
gtacaaactaattttctgctttactttgattttcttgccaccttgcctaccatgttaagttgctaaatatatcctgtttgtctttagGGTATTTTGATGTTAGGGATTGCAATGATGCTTGGATTCGAGTGTGGGTCAAGAAAGGAGGAATGATCATCTTACCTGCTGGAATTTATCATCGCTTTAC

upper sequence: Vv05s0020g04080.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G13570.1 (Glycine max), 3'ss of exon 3
--gtaggatgagttgcagttttgtagtt-tttagttcccactctacctattaacccaggctttctaat-ttttactttatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAAAGAAAGGAGGAATGATTGTATTACCTGCTGGAATTTATCACCGGTTCAC--------------------------------------------
   |    | | || | | |||    |  |||  || ||||  | ||||  |    | | |    ||| | | |  ||    |  ||| |||| |||||| | |||||| |||||  ||||||| |||| |||| | |||||||||||||||||  | |||||||   |||||||||| |  || ||                                            
gtatgaactaattttctgctttactttgattttcttgccaccttgcctaccattttaagttgctaaatatatcatgtttgtctttaggctattgtgatgttaaggatcacaatgatgcttggattcgtgagTGGGTCAAGAAAGGAGGAATGATCATCTTACCTGTCAGAATTTATCATCACTTTACGCTAGATGAGAGCAACTACATTAAGGTATTGATTGCATATTTAC

upper sequence: Vv05s0020g04080.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT4G14710.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaggatgagttgcagttttgtagtttttagttcccactctacctattaacccaggctttctaatttttactttat--ggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAAAGAAAGGAGGAATGATTGTATTACCTGCTGGAATTTATCACCGGTTCAC
      | |||   | |||| | |  |    | |    | ||  |    | | |   | || |  ||| | ||| |  ||  ||||||| ||||||||||||||||  |||||  |||||||  | || ||| ||||||| ||||| ||||| || |||||||||||||| ||||| || |||||
-----gtaagt---acttttattggctgctttacttgatttaagtcggtatctatattctcaacgtttcattttcttgggaaaagGTTACTTTGATGTGAGGGATCGCAATGAAGCTTGGATTAGAGTATGGGTAAAGAAGGGAGGTATGATAGTCTTACCTGCTGGAATATATCATCGCTTCAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28959685|gb|CB339843.1|CB339843
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|110404631|gb|EC969992.1|EC969992
EST:     CTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: CTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|110713746|gb|EE089937.1|EE089937
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|110421959|gb|EC988266.1|EC988266
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|30296431|gb|CB973225.1|CB973225
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|110701874|gb|EE079942.1|EE079942
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|33401763|gb|CF207390.1|CF207390
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|110702193|gb|EE080629.1|EE080629
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAAGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|30304245|gb|CB981039.1|CB981039
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|28958843|gb|CB339421.1|CB339421
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|34544397|gb|CF512629.1|CF512629
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|110410229|gb|EC975907.1|EC975907
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|26267306|gb|CA818369.1|CA818369
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|110711319|gb|EE087674.1|EE087674
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|26263102|gb|CA814165.1|CA814165
EST:     AGACCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|110370005|gb|EC934179.1|EC934179
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|27586811|gb|CB009506.1|CB009506
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|110421734|gb|EC988034.1|EC988034
EST:     GATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: GATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|110429045|gb|EC995532.1|EC995532
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|351018907|gb|FQ426406.1|FQ426406
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|30303116|gb|CB979910.1|CB979910
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|30303177|gb|CB979971.1|CB979971
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|22011493|gb|BQ796527.1|BQ796527
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|30305201|gb|CB981995.1|CB981995
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCCACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|110720418|gb|EE096325.1|EE096325
EST:     AGAGCATCTTCGCACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|110363595|gb|EC927194.1|EC927194
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|110723038|gb|EE099892.1|EE099892
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|71856794|gb|DT005849.1|DT005849
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|30304592|gb|CB981386.1|CB981386
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|30295842|gb|CB972636.1|CB972636
EST:     AGAGCATCTTCACCCTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|110693433|gb|EE069670.1|EE069670
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|37183887|gb|CF603241.1|CF603241
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|37183616|gb|CF602970.1|CF602970
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTG
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTG
EST: gi|34547073|gb|CF515305.1|CF515305
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|30300759|gb|CB977553.1|CB977553
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|71874369|gb|DT023424.1|DT023424
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|30298116|gb|CB974910.1|CB974910
EST:     AGAACATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|32459059|gb|CD800233.1|CD800233
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|30305264|gb|CB982058.1|CB982058
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCCACTGTGTGGCAGGAAGTG                         GTTATTTTGATGGGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|34545434|gb|CF513666.1|CF513666
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|26266055|gb|CA817118.1|CA817118
EST:     AGAGCATCTTCACCCTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|110361145|gb|EC924598.1|EC924598
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|110408280|gb|EC973912.1|EC973912
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|30304172|gb|CB980966.1|CB980966
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|28962565|gb|CB341598.1|CB341598
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|30296486|gb|CB973280.1|CB973280
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|110422416|gb|EC988740.1|EC988740
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|30304643|gb|CB981437.1|CB981437
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|26261905|gb|CA812968.1|CA812968
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|30299314|gb|CB976108.1|CB976108
EST:     AGAGTATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|110376672|gb|EC941739.1|EC941739
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|34545521|gb|CF513753.1|CF513753
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|71890112|gb|DT039167.1|DT039167
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|29785029|gb|CB341669.2|CB341669
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|110729733|gb|EE106009.1|EE106009
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|26265385|gb|CA816448.1|CA816448
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|110409494|gb|EC975157.1|EC975157
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|110427849|gb|EC994302.1|EC994302
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|30330541|gb|CD013803.1|CD013803
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|110375584|gb|EC940585.1|EC940585
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|33407577|gb|CF213204.1|CF213204
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|26265446|gb|CA816509.1|CA816509
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|110373668|gb|EC937924.1|EC937924
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|161706350|gb|FC056297.1|FC056297
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|33407550|gb|CF213177.1|CF213177
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|22007489|gb|BQ792523.1|BQ792523
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|26257583|gb|CA808646.1|CA808646
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
EST: gi|26257644|gb|CA808707.1|CA808707
EST:     AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTG                         GTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA
genomic: AGAGCATCTTCACACTGATGAGGAGATTCGCTACTGTGTGGCAGGAAGTGgtaggatgag ... tatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagttcccactctacctattaacccaggctttctaatttttactttatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAAAGAAAGGAGGAATGATTGTATTACCTGCTGGAATTTATCACCGGTTCAC
                                    tttttacttt  CT-rich tract
                             tttctaatttttactt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaggatgagttgcagttttgtagtttttagttcccactctacctattaacccaggctttctaatttttactttatggtgaagGTTATTTTGATGTGAGGGATCAAAATGACTCTTGGATCCGTGTGTGGCTAAAGAAAGGAGGAATGATTGTATTACCTGCTGGAATTTATCACCGGTTCAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA