Sequence
atgc intronic sequence ATGC exonic sequencegtaaatagattttgtttaggtatctcatttggctttcaataggttggagacttcaatatttactaatattcttaatcatcttgcatattaattatgaggctactgtcaaatacttgcagAAAATACTACTGCTTGGAGGACAGATGAAGAGTTTGGACGAGAAATGCTGGCAGGAGTAAACCCTGTTATAATCCGTCGCCTAGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g03170.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA0428S00200.1 (Glycine max), 3'ss of exon 4
gtaaatagattttgtttaggtatctcatttggctttcaataggttggagacttcaatatttactaatattcttaatcatcttgcatattaattatgaggctactgtcaaatacttgcagAAAATACTACTGCTTGGAGGACAGATGAAGAGTTTGGACGAGAAATGCTGGCAGGAGTAAACCCTGTTATAATCCGTCGCCTAGAA
||| | || | | || |||| ||||| | | |||| | | || ||| || | | | | |||| || | || | ||| ||| | || ||||| |||||||||||||| || |||| | | |||||||| ||||| || ||||||||||| ||||| || || |
gtatactaatgctttccctttacctcacctggctatga------tgga----------ctcattagtatgatttagc------tacactaat-atctg--tattatca--------cagTGAGTAAGACTGCATGGAGGACAGATGAGGAATTTGCAAGGGAAATGCTTGCAGGGGTTAACCCTGTTATTATCCGCCGTCTTCAG
upper sequence: Vv05s0020g03170.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA20G28290.2 (Glycine max), 3'ss of exon 4
gtaaatagattttgtttaggtatctcatttggctttcaataggttggagacttcaatatttactaatattcttaatcatcttgcatattaattatgaggctactgtcaaatacttgcagAAAATACTACTGCTTGGAGGACAGATGAAGAGTTTGGACGAGAAATGCTGGCAGGAGTAAACCCTGTTATAATCCGTCGCCTAGAA
| | | | | | | || ||| | | ||||| | | | ||| || | |||| | |||||| | ||| ||| |||||| | || || || |||||||||||||| || |||| | | |||||||| ||||| || ||||||||||| ||||| || || ||
---------gtatactaatgctttcccctta-cttcttctggcttggatga------gctcatcagtatgatt--ttatct---acattaatatt--------tgt---ataattgcagTGAGTAAGACAGCATGGAGGACAGATGAGGAATTTGCAAGGGAAATGCTTGCAGGGGTTAACCCTGTTATTATCCGCCGTCTCCAA
upper sequence: Vv05s0020g03170.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT3G22400.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaaatagattttgtttaggtatctcatttggctttcaataggttggagacttcaatatttactaatattcttaatcatcttgcatattaattatgaggctactgtcaaatacttgcagAAAATACTACTGCTTGGAGGACAGATGAAGAGTTTGGACGAGAAATGCTGGCAGGAGTAAACCCTGTTATAATCCGTCGCCTAGAA
| | | | | |||| || | | | | ||||| | || || || | || ||| ||| | | || |||| | | | ||||||||||| || |||||||||| |||||||||||||| || | || || || | || | || || |
------------------------gtacgtaacgtatcaacggttagatattcgattcagacctaatgctttttatagattttgacat--------aggtggtcgtctattgct-acagAGAGCAGATCGGCTTGGAGGACTGACGAAGAGTTTGCTCGAGAAATGCTGGCCGGTCTTAATCCGGTGGTGATTAGCCGTCTTCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatattcttaatcatcttgcatattaattatgaggctactgtcaaatacttgcagAAAATACTACTGCTTGGAGGACAGATGAAGAGTTTGGACGAGAAATGCTGGCAGGAGTAAACCCTGTTATAATCCGTCGCCTAGAA
ttgcatattaattat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaatagattttgtttaggtatctcatttggctttcaataggttggagacttcaatatttactaatattcttaatcatcttgcatattaattatgaggctactgtcaaatacttgcagAAAATACTACTGCTTGGAGGACAGATGAAGAGTTTGGACGAGAAATGCTGGCAGGAGTAAACCCTGTTATAATCCGTCGCCTAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG