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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgctcatctgaataactttgctatttcatcattgaagttcccttattcatttgcattcattgcctacactttcaagGTACAAATGGATGACATATGGAGAAGCAGGTACTGCTCGATCAGCAATTGGTTCTGGTTTAATATACTATGGAATACCGAAA

Basic information

species Vitis vinifera
transcript Vv05s0020g03080.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os11g04980.1 (Oryza sativa), 3'ss of exon 4
gtaag--ttgctcatctgaataactttgctatt--tcatcattgaagttccctt--attcatttgcattcattgcctac---actttcaagGTACAAATGGATGACATATGGAGAAGCAGGTACTGCTCGATCAGCAATTGGTTCTGGTTTAATATACTATGGAATACCGAAA
|||||  ||  |   ||| |||  | || ||||  |     ||| || |   ||  | || |||  ||    |   ||    |||||  || ||||||||||||||||||||||||||  ||||     |  | ||||| ||||||||| | || ||  ||||||||||  ||
gtaaggattagtt-cctggatatatgtgttattattggcttttgtagctttgttcaaatcttttaaatgatatatgtatggaactttgcagCTACAAATGGATGACATATGGAGAAGCTAGTACAAACAGGACTGCAATAGGTTCTGGTCTTATTTATCATGGAATACCTGAA

upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os12g04990.1 (Oryza sativa), 3'ss of exon 4
gtaag--ttgctcatctgaataactttgctat--ttcatcattgaagttcccttat--tcatttgcattcattgcctacactttca-agGTACAAATGGATGACATATGGAGAAGCAGGTACTGCTCGATCAGCAATTGGTTCTGGTTTAATATACTATGGAATACCGAAA
|||||  ||| |   ||| |||  | ||  ||  ||     ||| || |   |||   || |||  ||    |   |  | | |   || ||||||||||||||||||||||||||  ||||    ||  | || || ||||||||| | || ||| ||||||||||  ||
gtaagaattggtt-cctggatatatatgtcattattgccttttgtagctttgttaaaatcttttaaatgatatatatgaattgttgcagCTACAAATGGATGACATATGGAGAAGCTAGTACAAGCCGGACTGCGATAGGTTCTGGTCTTATTTACCATGGAATACCTGAA

upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os12g04990.3 (Oryza sativa), 3'ss of exon 3
------------gtaag--ttgctcatctgaataactttgctat--ttcatcattgaagttccctta--ttcatttgcattcattgcctacact-ttcaagGTACAAATGGATGACATATGGAGAAGCAGGTACTGCTCGATCAGCAATTGGTTCTGGTTTAATATACTATGGAATACCGAAA
            |||||  ||| |   ||| |||  | ||  ||  ||     ||| || |   |||   || |||  ||    |   |  | | ||  || ||||||||||||||||||||||||||  ||||    ||  | || || ||||||||| | || ||| ||||||||||  ||
aacagttggggagtaagaattggtt-cctggatatatatgtcattattgccttttgtagctttgttaaaatcttttaaatgatatatatgaattgttgcagCTACAAATGGATGACATATGGAGAAGCTAGTACAAGCCGGACTGCGATAGGTTCTGGTCTTATTTACCATGGAATACCTGAA

upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA20G28200.1 (Glycine max), 3'ss of exon 4
---------------------gtaagttgctcatctgaataactttgctatttcatc---attga---agttcccttat--tcatttgcattcattgcctacactttcaagGTACAAATGGATGACATATGGAGAAGCAGGTACTGCTCGATCAGCAATTGGTTCTGGTTTAATATACTATGGAATACCGAAA
                      || |   ||     |     ||| | | ||||||    ||| |   ||   |||| |  |||||| ||||  |     ||  ||| |||||||||||||||||||||||||||||||||||| || || |||||||| ||||||||||| || || |||||||| |  || 
gtaagcagctccattgtcaacctatgacactttctgggccttcttcgttttttcattcaaatttacttagcatccttctcatcatttccatttttccttcac-tttttaagGTACAAATGGATGACATATGGAGAAGCAGGTACGGCCCGGTCAGCAATAGGTTCTGGTTTGATTTATTATGGAATCCAAAAG

upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G39540.1 (Glycine max), 3'ss of exon 4
---------------gtaagttgctca---tctgaataactttgctatttcatcattgaagttcccttat--tcatttgcattcattgcctacactttcaagGTACAAATGGATGACATATGGAGAAGCAGGTACTGCTCGATCAGCAATTGGTTCTGGTTTAATATACTATGGAATACCGAAA
               || |     | |   | |   |  |||   | |||  ||||| || ||  ||||   || ||  |||| ||| | |    ||| ||||||||||||||| |||||||||||||||||||| || || |||||||| ||||||||||| || ||  |||||||    || 
gtaagcagctcaattgtcaacctatgacactttctgtgccttctttgttttttcattcaaatttacttagcatccttctcatt-attccttcactttttaagGTACAAATGGATAACATATGGAGAAGCAGGTACGGCCCGGTCAGCAATAGGTTCTGGTTTGATTTATCATGGAATCGAAAAG

upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT3G05970.1 (Arabidopsis thaliana), 3'ss of exon 4
--------gtaagttgctca-tctgaataactttgcta-----tttcatcattgaagttcccttattcatttgcattcattgcctacactttcaagGTACAAATGGATGACATATGGAGAAGCAGGTACTGCTCGATCAGCAATTGGTTCTGGTTTAATATACTATGGAATACCGAAA
         ||| || |||| |||   |   | ||| |     |    || |||||| |   ||  | || ||  |   ||   |    |||  || |||||||||||||||||||||||||| ||||| ||  || | ||  | |||||||||||  |  |  | ||||| || |  
gtgagctcctaacttactcaatctatgtgtatctgcaagaaagtactttccttgaagctagttttcttatgtgactctgtt--ttgtttttttcagCTACAAATGGATGACATATGGAGAAGCTGGTACAGCAAGAACTGCTTTAGGTTCTGGTTTGGTTCATCACGGAATCCCCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttcatcattgaagttcccttattcatttgcattcattgcctacactttcaagGTACAAATGGATGACATATGGAGAAGCAGGTACTGCTCGATCAGCAATTGGTTCTGGTTTAATATACTATGGAATACCGAAA
                                             cactttc  CT-rich tract
                     ttattcattt  TA-rich tract