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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttggggcctgaaatgacagaataatttgttgtccatgctttattttatactgctgctgctgtttgttttcccatttttagagacaacttaaacttattttctttatatcttgtttcagAAACCTGTCAAATATGGGTCTTTCAGGATCACTGTCACCTAGTGTTGCCAATTTGACTGCGTTGACCAACAT

Basic information

species Vitis vinifera
transcript Vv05s0020g03030.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32267555|gb|CD716518.1|CD716518
EST:     TGGACTGGAGTTACATGTTCTGAAGGACCTCGGATTCGTGTGGTTTCTTT                         AAACCTGTCAAATATGGGTCTTTCAGGATCACTGTCACCTAGTGTTGCCAA
genomic: TGGACTGGAGTTACATGTTCTGAAGGACCTCGGATTCGTGTGGTTTCTTTgtgagttggg ... cttgtttcagAAACCTGTCAAATATGGGTCTTTCAGGATCACTGTCACCTAGTGTTGCCAA
EST: gi|110715874|gb|EE094419.1|EE094419
EST:     TGGACTGGAGTTACATGTTCTGAAGGACCTCGGATTCGTGTGGTTTCTTT                         AAACCTGTCAAATATGGGTCTTTCAGGATCACTGTCACCTAGTGTTGCCAA
genomic: TGGACTGGAGTTACATGTTCTGAAGGACCTCGGATTCGTGTGGTTTCTTTgtgagttggg ... cttgtttcagAAACCTGTCAAATATGGGTCTTTCAGGATCACTGTCACCTAGTGTTGCCAA
EST: gi|110717731|gb|EE093842.1|EE093842
EST:     TGGACTGGAGTTACATGTTCTGAAGGACCTCGGATTCGTGTGGTTTCTTT                         AAACCTGTCAAATATGGGTCTTTCAGGATCACTGTCACCTAGTGTTGCCAA
genomic: TGGACTGGAGTTACATGTTCTGAAGGACCTCGGATTCGTGTGGTTTCTTTgtgagttggg ... cttgtttcagAAACCTGTCAAATATGGGTCTTTCAGGATCACTGTCACCTAGTGTTGCCAA
EST: gi|110717898|gb|EE094155.1|EE094155
EST:     TGGACTGGAGTTACATGTTCTGAAGGACCTCGGATTCGTGTGGTTTCTTT                         AAACCTGTCAAATATGGGTCTTTCAGGATCACTGTCACCTAGTGTTGCCAA
genomic: TGGACTGGAGTTACATGTTCTGAAGGACCTCGGATTCGTGTGGTTTCTTTgtgagttggg ... cttgtttcagAAACCTGTCAAATATGGGTCTTTCAGGATCACTGTCACCTAGTGTTGCCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttcccatttttagagacaacttaaacttattttctttatatcttgtttcagAAACCTGTCAAATATGGGTCTTTCAGGATCACTGTCACCTAGTGTTGCCAATTTGACTGCGTTGACCAACAT
                                 ttttctttatatctt  CT-rich tract
 ttaaacttattttctt  TA-rich tract