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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgagttttacatttcaagctatatgatttgtatgtttagaatgctgatttgcttaacttgttaaatattcagGTTATAAGAATGTATACAAAACAGCTATTATTAGGATTGGAATACCTTCACAAAAATGGTATTATGCATAGGGACATAAAG

Basic information

species Vitis vinifera
transcript Vv05s0020g02910.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g02910.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G39670.1 (Glycine max), 3'ss of exon 4
-----------------gtaagtgagttttacatttcaagctatatga-----tttgtatgtttagaatgctgatttgcttaacttgttaaatattcagGTTATAAGAATGTATACAAAACAGCTATTATTAGGATTGGAATACCTTCACAAAAATGGTATTATGCATAGGGACATAAAG
                  ||  | | | || | ||   |   | ||       ||    ||||  || |  |   ||||| ||  |      |  ||||||||||| |||||||||||||||||| ||| | ||  | ||||| |||||||  || || ||||| || ||||| || |||
gtaagtggttgtttcgtttatttaattatttctttatgaagcacatagagactttaacgtgttctgattcttttgttgctcaatgttcatttttatcagGTTATAAAAATGTATACAAAACAGCTTTTACTGGGCCTTGAATATCTTCACAGTAACGGGATTATTCACAGGGATATTAAG

upper sequence: Vv05s0020g02910.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA20G28090.1 (Glycine max), 3'ss of exon 4
gtaagtgagttttacatttcaagctatatgatttgtatg-----tttagaatgctgatttgcttaacttgttaaatattca------------gGTTATAAGAATGTATACAAAACAGCTATTATTAGGATTGGAATACCTTCACAAAAATGGTATTATGCATAGGGACATAAAG
|||||||  | || | |||    || |||||     ||      ||||  | | |    | |||   ||| | ||| ||||            |||||||| |||||||||||||||||| ||| | ||  | ||||| |||||| | || || ||||| || ||||| ||||||
gtaagtggttgtttcgtttatttctttatgaagcacatagaaactttaacacgttctgattcttttgttgctcaatgttcattttctttatcagGTTATAAAAATGTATACAAAACAGCTTTTACTGGGCCTTGAATATCTTCACGATAACGGGATTATTCACAGGGATATAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctatatgatttgtatgtttagaatgctgatttgcttaacttgttaaatattcagGTTATAAGAATGTATACAAAACAGCTATTATTAGGATTGGAATACCTTCACAAAAATGGTATTATGCATAGGGACATAAAG
                                 gcttaac  putative branch site (score: 3)
                                   ttaacttgttaaatat  TA-rich tract