Sequence
atgc intronic sequence ATGC exonic sequencegtaaataagtttttgtcctgtatccttgaaatatttttttcactggaatatacaaaacagtaactatcataatgtaaatccatgtttttattttgtacagGTTTGATAAAGGTTCTTCAAGCAATTAATGGCACCACCTGGCATGACACCTTTTTGGGTCTTTGGATTGCAGCTCTTCGTCTTGTTCAAAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g02570.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G28070.1 (Glycine max), 3'ss of exon 4
gtaaataagtttttgtcctgtatccttgaaatatttttttcactggaatatacaaaaca--gtaactatcataatgtaaatccatgtttt------tattttgtacagGTTTGATAAAGGTTCTTCAAGCAATTAATGGCACCACCTGGCATGACACCTTTTTGGGTCTTTGGATTGCAGCTCTTCGTCTTGTTCAAAGG
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----gtaagactgagaatagt--tattggaat------ctgactgaaatgtagatattgtcttttcaactttaatttaggtacctgtcacatgaaattttttgtgtagGTTTGATAAAGACCCTGCGAGCAATAAATGGCACCTCTTGGCATGACACATTTTTAGGCCTTTGGTTGGCAACTCTTCGTCTTGTTCAAAGG
upper sequence: Vv05s0020g02570.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA15G10970.1 (Glycine max), 3'ss of exon 4
-----gtaaataagtttttgtcctgtatccttgaaatatttttttcactggaatatacaaaacagtaactatcataatgtaaatccatgtttttattttgtacagGTTTGATAAAGGTTCTTCAAGCAATTAATGGCACCACCTGGCATGACACCTTTTTGGGTCTTTGGATTGCAGCTCTTCGTCTTGTTCAAAGG
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gtgagattgagaatagttatcagaatctgactgaaatagttgatt---ttgtcttttcaaatt--taatttaggtacttgtca--catggaatt-ttttgtgtagGTTTGATAAAGACCCTGCGAGCAATAAATGGCACCTCTTGGCATGACACTTTTTTAGGCCTTTGGTTAGCAACTCTTCGTCTTGTTCAGAGG
upper sequence: Vv05s0020g02570.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT3G23590.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaaataagtttttg--tcctgtatccttgaaatatttttttcactggaatatacaaaacagtaac-tatcataatgtaaatccatgtttttattttgtacagGTTTGATAAAGGTTCTTCAAGCAATTAATGGCACCACCTGGCATGACACCTTTTTGGGTCTTTGGATTGCAGCTCTTCGTCTTGTTCAAAGG
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----gtaatttgtagactccatcttctttcacttgtggctttgaccaaagaaaagatatctcaaatatataacgaaatgacttgggagtattaaatttt-cagGTCTAGCTAAAACACTTAAAGAAATTAATGGGAGCACTTGGCATGACACTTTCTTGGGGCTTTGGATAGCAGCTCTCCGACTTGTTCAAAGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaatatacaaaacagtaactatcataatgtaaatccatgtttttattttgtacagGTTTGATAAAGGTTCTTCAAGCAATTAATGGCACCACCTGGCATGACACCTTTTTGGGTCTTTGGATTGCAGCTCTTCGTCTTGTTCAAAGG
cagtaac putative branch site (score: 2)
tttttatttt putative PPT
atgtttttattttgta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaataagtttttgtcctgtatccttgaaatatttttttcactggaatatacaaaacagtaactatcataatgtaaatccatgtttttattttgtacagGTTTGATAAAGGTTCTTCAAGCAATTAATGGCACCACCTGGCATGACACCTTTTTGGGTCTTTGGATTGCAGCTCTTCGTCTTGTTCAAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC