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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttaaaggattattattacagtttagtatttatatgagaataaatgtttttataagtcagagataccaggaatatattaacacactgctcaatgtgtttacagATTTTCCAGTGGTTGGCTAGCATGCCTATTGAGTTGGAGGGCTATATCCGTCCTGGGTGTATCATCTTAACAATTTTTATTGCAATGCCAAAGTTTATGT

Basic information

species Vitis vinifera
transcript Vv05s0020g02160.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g02160.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os05g33810.1 (Oryza sativa), 3'ss of exon 4
gtattttaaaggattattattacagtttagtatttatatgagaataaatgtttttataagtcagagat-accaggaatatattaacacactgctcaatgtgtttacagATTTTCCAGTGGTTGGCTAGCATGCCTATTGAGTTGGAGGGCTATATCCGTCCTGGGTGTATCATCTTAACAATTTTTATTGCAATGCCAAAGTTTATGT
| ||| | | | || || | || | |||||| || | |||| ||| | | || || | ||| || ||||| || ||||| | ||||||||||| |||| ||||||||||||| |||||||| |||| || ||||| | ||| ||||||||||| | |||||
-----------gtatataaccaggctctaagtttctcaatagcacgc-tgttttcatgcccaaaagattgttctgaactcaatgccatac-gtaaaatatg----cagATATTTGAGTGGCTTTCTAGCATGCCTGTTGAACTGGAGGGCTATATTCGTCCTGGTTGTACAATTTTAACTGTATTTGTTGCAATGCCACAACATATGT

upper sequence: Vv05s0020g02160.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G109354_T01 (Zea mays), 3'ss of exon 4
gtattttaaaggattattattacagtttagtatttatatgagaataaatgtttttataagtcagagataccaggaatatattaacacactgctcaatgtg--tttacagATTTTCCAGTGGTTGGCTAGCATGCCTATTGAGTTGGAGGGCTATATCCGTCCTGGGTGTATCATCTTAACAATTTTTATTGCAATGCCAAAGTTTATGT
|| |||| || | | || || | ||| ||| | | ||| |||| |||| ||||| | | ||||| ||| | ||||||| |||||||||| |||| ||||||||||| || ||||| || ||||| || ||||| | ||||||||||||||| || |||||
------------------------gtatagtcttgctctaag--------ttcatttaacatagaaccat----attattttaaagggatgctatatgtgaatgtgcagATCTTCGAATGGTTGGGTAGCATGCCTGTTGAATTGGAGGGCTACATTCGTCCGGGTTGTATTATTTTAACTGTATTTATTGCAATGCCACAGCATATGT

upper sequence: Vv05s0020g02160.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G28460.1 (Glycine max), 3'ss of exon 4
gtattttaaaggattattattacagtttagtatttatatgagaataaatgtttttataagtcagagataccaggaatatattaacacactgctcaatgtgtttacagATTTTCCAGTGGTTGGCTAGCATGCCTATTGAGTTGGAGGGCTATATCCGTCCTGGGTGTATCATCTTAACAATTTTTATTGCAATGCCAAAGTTTATGT
||||||||||| ||| ||||| ||||||||||||| || || || || | | || | || || ||||||| |||| |||| ||| ||||| ||||| |||||||| || |||||| | ||||||||||| |||||||| |||||||||| ||| | |||||||||||||||||||| || | ||||
gtattttaaagcattgttattgcagtttagtatttgaatagtggcaagatcttctaccg--tatacatgctagtaactgattaacaggctgccaaatgcatttgcagATATTCCAATGGTTGGCAAGTATGCCTGTGGAGTTGGAGGGATATATCCGCCCTGGGTGTACGATCCTGACAATTTTTATTGCAATGCCTAACATCATGT

upper sequence: Vv05s0020g02160.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA15G10620.1 (Glycine max), 3'ss of exon 4
gtattttaaaggattattattacagtttagtatttatatgagaataaatgtttttataagtcagagataccaggaatatattaacacactgctcaatgtgttt--acagATTTTCCAGTGGTTGGCTAGCATGCCTATTGAGTTGGAGGGCTATATCCGTCCTGGGTGTATCATCTTAACAATTTTTATTGCAATGCCAAAGTTTATGT
||||||||||| ||| ||||| ||||||||||||| || || || | | | | || | || ||||||| | || | || ||| ||||| ||||| |||||||| | |||||| | || ||||| || |||||||| |||||||||| ||| | ||| |||||||||||||||| || ||||||
gtattttaaagcattgttattgcagtttagtatttgaatagtggcaagatcttctgctatgtacatgtat--gtaactgattaacaggcagccaattgcatttgtgcagATATTCCAATGGTTGGCAAATATGCCTGTAGAATTGGAAGGATATATCCGCCCTGGGTGTACGATCCTGACAGTTTTTATTGCAATGCCTAACATTATGT

upper sequence: Vv05s0020g02160.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT5G18830.3 (Arabidopsis thaliana), 3'ss of exon 4
gtattttaaaggattat-tattacagtttagtatttatatgagaataaatgtttttataagtcagagataccaggaatatattaacacactgctcaat-gtgtttacagATTTTCCAGTGGTTGGCTAGCATGCCTATTGAGTTGGAGGGCTATATCCGTCCTGGGTGTATCATCTTAACAATTTTTATTGCAATGCCAAAGTTTATGT
||||| | ||| ||||| |||||||||||||| || | | || || | || ||||| | | ||| || || | | | | | | ||| ||||| || || |||||||| | ||||||| ||||| |||||||||||||||| || || |||| || || || | ||||| ||||||||| || ||||||
gtattctcaagaattatatattacagtttagtgttcaaa-gactatgtttaccttc-----tcagaatctcaaagaac-taatatcttgcgattaatttgaatttgcagATATTTCAATGGTTGGCCAACATGCCTGTTGAGCTGGAGGGCTATATCCGCCCAGGATGTACAATTTTGACTGTCTTTATAGCAATGCCAGAGATTATGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttataagtcagagataccaggaatatattaacacactgctcaatgtgtttacagATTTTCCAGTGGTTGGCTAGCATGCCTATTGAGTTGGAGGGCTATATCCGTCCTGGGTGTATCATCTTAACAATTTTTATTGCAATGCCAAAGTTTATGT
                          tattaac  putative branch site (score: 1)
 aatatattaacaca  TA-rich tract