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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaatttaaggttgcaattggttttagcttgttcttcgttatttttcttattgttcttttggcagTTTGCAAAAGATAGTGGCAAATACCTTGAAGAGAAAAAACTAAGAGTGGTTCTCATTGGCCCTGCTCATTCTCCTGTATTGCTACCACTTAATGGATTAT

Basic information

species Vitis vinifera
transcript Vv05s0020g01970.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77577813|gb|DV217658.1|DV217658
EST:     GCACAGTTGTCCCCTATGGTACAACTGAAACCGATATTAGATCTGACATG                         TTTGCAAAAGATAGTGGCAAATACCTTGAAGAGAAAAAACTAAGAGTGGTT
genomic: GCACAGTTGTCCCCTATGGTACAACTGAAACCGATATTAGATCTGACATGgtaagaattt ... cttttggcagTTTGCAAAAGATAGTGGCAAATACCTTGAAGAGAAAAAACTAAGAGTGGTT
EST: gi|77578716|gb|DV218154.1|DV218154
EST:     GCACAGTTGTCCCCTATGGTACAACTGAAACCGATATTAGATCTGACATG                         TTTGCAAAAGATAGTGGCAAATACCTTGAAGAGAAAAAACTAAGAGTGGTT
genomic: GCACAGTTGTCCCCTATGGTACAACTGAAACCGATATTAGATCTGACATGgtaagaattt ... cttttggcagTTTGCAAAAGATAGTGGCAAATACCTTGAAGAGAAAAAACTAAGAGTGGTT
EST: gi|71877086|gb|DT026141.1|DT026141
EST:     GCACAGTTGTCCCCTATGGTACAACTGAAACCGATATTAGATCTGACATG                         TTTGCAAAAGATAGTGGCAAATACCTTGAAGAGAAAAAACTAAGAGTGGTT
genomic: GCACAGTTGTCCCCTATGGTACAACTGAAACCGATATTAGATCTGACATGgtaagaattt ... cttttggcagTTTGCAAAAGATAGTGGCAAATACCTTGAAGAGAAAAAACTAAGAGTGGTT
EST: gi|110386615|gb|EC951229.1|EC951229
EST:     GCACAGTTGTCCCCTATGGTACAACTGAAACCGATATTAGATCTGACATG                         TTTGCAAAAGATAGTGGCAAATACCTTGAAGAGAAAAAACTAAGAGTGGTT
genomic: GCACAGTTGTCCCCTATGGTACAACTGAAACCGATATTAGATCTGACATGgtaagaattt ... cttttggcagTTTGCAAAAGATAGTGGCAAATACCTTGAAGAGAAAAAACTAAGAGTGGTT
EST: gi|110395840|gb|EC961513.1|EC961513
EST:     CTGAAACCGATATTAGATCTGACATG                         TTTGCAAAAGATAGTGGCAAATACCTTGAAGAGAAAAAACTAAGAGTGGTT
genomic: CTGAAACCGATATTAGATCTGACATGgtaagaattt ... cttttggcagTTTGCAAAAGATAGTGGCAAATACCTTGAAGAGAAAAAACTAAGAGTGGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgcaattggttttagcttgttcttcgttatttttcttattgttcttttggcagTTTGCAAAAGATAGTGGCAAATACCTTGAAGAGAAAAAACTAAGAGTGGTTCTCATTGGCCCTGCTCATTCTCCTGTATTGCTACCACTTAATGGATTAT
                     ttcttcgttatttttc  CT-rich tract
                            ttatttttcttattgt  TA-rich tract