Sequence
atgc intronic sequence ATGC exonic sequencegtaaaaaactgttgatatctgatcctaggtttgctatacataataatttgattaaagttgtatgtcaaagctattcttccaaactgaaacctttattttgttttcctaaatagCATGCAGCAGCTGTAATTGGGAACAAGATGGTAGTGGTTGGTGGTGAATCTGAAAATGGATTATTAGAAGATGTACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G38020.1 (Glycine max), 3'ss of exon 3
gtaaaaaactgttgatatctgatcctaggtttgctatacataataatttgattaaagttgtatgtcaaagctattcttccaaactgaaacc-tttattttgtttt---cctaaatagCATGCAGCAGCTGTAATTGGGAACAAGATGGTAGTGGTTGGTGGTGAATCTGAAAATGGATTATTAGAAGATGTACAG
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--------gtctctctctctgtcttt---ttttctgcaactgcagctattattacttgtgtctttcaaggtaaaataactgaattgttgttattcattgtgaattatgtatgagtagCATGCAGCAGCTGTCATTGGGAATAAGATGATAGTGGTGGGCGGTGAATCTGGGACTGGATTGTTGGATGACGTGCAG
upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA15G10310.1 (Glycine max), 3'ss of exon 4
gtaaaaaactgttgatatctgatcctaggtttgctata---cataataatttgattaaagttgtatgtcaa---agctattcttccaaactgaaacctttattttgttttcctaaatagCATGCAGCAGCTGTAATTGGGAACAAGATGGTAGTGGTTGGTGGTGAATCTGAAAATGGATTATTAGAAGATGTACAG
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gtatgtaattttctgattcttgttatattttttatttggtcctgagtctttttgtggaagttttacgactactgagcagttttggcaaaa-gacataactatcac-tctttgtgaatagCATGCTGCAGCTGTCATTCAGAATAAAATGATAGTGGTTGGTGGTGAATCTGGAAGTGGATTGTTAGACGGCGTACAG
upper sequence: Vv05s0020g01740.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G28760.1 (Glycine max), 3'ss of exon 2
gtaaa-aaactgttgatatctg----atcctaggtttgctatacataataatttgattaaagttgtatg---tcaaagctattcttccaaactgaaacctttattttgttttcctaaatagCATGCAGCAGCTGTAATTGGGAACAAGATGGTAGTGGTTGGTGGTGAATCTGAAAATGGATTATTAGAAGATGTACAG
||| ||| | |||| || || || |||| | | | | ||| | ||||| |||| || ||| || | |||| ||| ||| | || | |||||||||| |||||||| ||| || |||||| ||||||||||||||||||| | | |||||| ||||| || || |||
gtatgtaaatttgtgattcttgttatattttacatttg--gtcctgagtctttttctggaagttttatgacttctgagcagttttggcaaa-tgacttaactatcac-tctttgtgaatagCATGCTGCAGCTGTCATTCAAAATAAGATGATAGTGGTTGGTGGTGAATCCGGGAGTGGATTGTTAGACGACGTGCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtatgtcaaagctattcttccaaactgaaacctttattttgttttcctaaatagCATGCAGCAGCTGTAATTGGGAACAAGATGGTAGTGGTTGGTGGTGAATCTGAAAATGGATTATTAGAAGATGTACAG
cctttattttgttttc CT-rich tract
tttattttgttttcct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaaaaactgttgatatctgatcctaggtttgctatacataataatttgattaaagttgtatgtcaaagctattcttccaaactgaaacctttattttgttttcctaaatagCATGCAGCAGCTGTAATTGGGAACAAGATGGTAGTGGTTGGTGGTGAATCTGAAAATGGATTATTAGAAGATGTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG