1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttgccttcagttgatgctgtcaatttccttactggaaattataattaagtgtatgtttcagtgcccatggcttaaaaaaagggtattattttcactgcagGTTTCAGTATGGAAGAATTAATGAGTATCCCAGCTGGTAGGAGAAGGAAATACCATGATGATGTGACTGTAATTGTGATCATCCTTGGAACAAATCACCG
species | Vitis vinifera |
transcript | Vv05s0020g01460.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCAAAGTTTCTATTGGAACAACTAGTACTGAGAGCAGCAGATTGTGCAG GTTTCAGTATGGAAGAATTAATGAGTATCCCAGCTGGTAGGAGAAGGAAATEST: gi|22015428|gb|BQ800462.1|BQ800462
genomic: AGCAAAGTTTCTATTGGAACAGCTAGTACTGAGAGCAGCAAATTGTGCAGgtacaatcct ... ttcactgcagGTTTCAGTATGGAAGAATTAATGAGTATCCCAGCTGGTAGGAGAAGGAAAT
EST: AGCAGCAGATTGCGCAG GTTTCAGTATGGAAGAATTAATGAGTATCCCAGCTGGTAGGAGAAGGAAATEST: gi|71875940|gb|DT024995.1|DT024995
genomic: AGCAGCAAATTGTGCAGgtacaatcct ... ttcactgcagGTTTCAGTATGGAAGAATTAATGAGTATCCCAGCTGGTAGGAGAAGGAAAT
EST: AGCAAAGTTTCTATTGGAACAGCTAGTACTGAGAGCAGCAGATTGTGCAG GTTTCAGTATGGAAGAATTAATGAGTATCCCAGCTGGTAGGAGAAGGAAATEST: gi|27583301|gb|CB005996.1|CB005996
genomic: AGCAAAGTTTCTATTGGAACAGCTAGTACTGAGAGCAGCAAATTGTGCAGgtacaatcct ... ttcactgcagGTTTCAGTATGGAAGAATTAATGAGTATCCCAGCTGGTAGGAGAAGGAAAT
EST: AGCAAAGTTTCTATTGGAACAGCTAGTACTGAGAGCAGCAAATTGTGCAG GTTTCAGTATGGAAGAATTAATGAGTATCCCAGCTGGTAGGAGAAGGAAATEST: gi|71871282|gb|DT020337.1|DT020337
genomic: AGCAAAGTTTCTATTGGAACAGCTAGTACTGAGAGCAGCAAATTGTGCAGgtacaatcct ... ttcactgcagGTTTCAGTATGGAAGAATTAATGAGTATCCCAGCTGGTAGGAGAAGGAAAT
EST: AGCAGAGTTTCTATTGGAACAGCTAGTACTGAGAGCAGCAGATTGTGCAG GTTTCAGTATGGAAGAATTAATGAGTATCCCAGCTGGTAGGAGAAGGAAATEST: gi|110417760|gb|EC983841.1|EC983841
genomic: AGCAAAGTTTCTATTGGAACAGCTAGTACTGAGAGCAGCAAATTGTGCAGgtacaatcct ... ttcactgcagGTTTCAGTATGGAAGAATTAATGAGTATCCCAGCTGGTAGGAGAAGGAAAT
EST: AGCAAAGTTTCTATTGGAACAACTAGTACTGAGAGCAGCAGATTGTGCAG GTTTCAGTATGGAAGAATTAATGAGTATCCCAGCTGGTAGGAGAAGGAAATEST: gi|110363321|gb|EC926899.1|EC926899
genomic: AGCAAAGTTTCTATTGGAACAGCTAGTACTGAGAGCAGCAAATTGTGCAGgtacaatcct ... ttcactgcagGTTTCAGTATGGAAGAATTAATGAGTATCCCAGCTGGTAGGAGAAGGAAAT
EST: AGCAAAGTTTCTATTGGAACAGCTAGTACTGAGAGCAGCAAATTGTGCAG GTTTCAGTATGGAAGAATTAATGAGTATCCCAGCTGGTAGGAGAAGGAAAT
genomic: AGCAAAGTTTCTATTGGAACAGCTAGTACTGAGAGCAGCAAATTGTGCAGgtacaatcct ... ttcactgcagGTTTCAGTATGGAAGAATTAATGAGTATCCCAGCTGGTAGGAGAAGGAAAT
taagtgtatgtttcagtgcccatggcttaaaaaaagggtattattttcactgcagGTTTCAGTATGGAAGAATTAATGAGTATCCCAGCTGGTAGGAGAAGGAAATACCATGATGATGTGACTGTAATTGTGATCATCCTTGGAACAAATCACCG
ttattttc CT-rich tract
ttaaaaaaagggtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgccttcagttgatgctgtcaatttccttactggaaattataattaagtgtatgtttcagtgcccatggcttaaaaaaagggtattattttcactgcagGTTTCAGTATGGAAGAATTAATGAGTATCCCAGCTGGTAGGAGAAGGAAATACCATGATGATGTGACTGTAATTGTGATCATCCTTGGAACAAATCACCG
- gccttca
- - - - - - - - ctgtcaa
- - - - - - - - - - - - - - ttactgg
- - - - - - - - - - - - - - - - - - - - - - - - gtgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa