1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgatgcccattatatgttgtcagaaggtcaaaacatttgttcccatctccatcaatgtttgattattgatacttctgttgcaattgtttcttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCA
species | Vitis vinifera |
transcript | Vv05s0020g01440.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGAEST: gi|77582258|gb|DV220092.1|DV220092
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGAEST: gi|77578306|gb|DV217933.1|DV217933
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGAEST: gi|77584529|gb|DV221330.1|DV221330
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGAEST: gi|77581182|gb|DV219518.1|DV219518
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGAEST: gi|110417657|gb|EC983731.1|EC983731
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGAEST: gi|34415518|gb|CF414272.1|CF414272
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: GCAAAGTTGGAGGGTCAAAGTTGGACACTCAAGTTAAGGTCTANCGTGAT GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGAEST: gi|110405060|gb|EC970590.1|EC970590
genomic: GCAAAGTTGGA-GGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGAEST: gi|34319828|gb|CF372582.1|CF372582
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: TGCAAAGTTGGAGGTCAAAGTGGGACACTCAAGTTAAGGTCTACCGTGAT GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGAEST: gi|110360839|gb|EC924252.1|EC924252
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGAEST: gi|71872568|gb|DT021623.1|DT021623
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGAEST: gi|71890487|gb|DT039542.1|DT039542
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGAEST: gi|77578619|gb|DV218101.1|DV218101
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGAEST: gi|77580102|gb|DV218941.1|DV218941
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGAEST: gi|110379884|gb|EC945106.1|EC945106
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGAEST: gi|71868186|gb|DT017241.1|DT017241
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGAEST: gi|71873162|gb|DT022217.1|DT022217
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGAEST: gi|71874260|gb|DT023315.1|DT023315
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGAEST: gi|110417988|gb|EC984094.1|EC984094
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGAEST: gi|351016864|gb|FQ424291.1|FQ424291
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
EST: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGAT GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
genomic: TGCAAAGTTGGAGGTCAAAGTTGGACACTCAAGTTAAGGTCTACCGTGATgtaagttctg ... ttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGA
tctccatcaatgtttgattattgatacttctgttgcaattgtttcttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCA
tattgat putative branch site (score: 3)
ttgtttcttcc putative PPT
aatgtttgattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatgcccattatatgttgtcagaaggtcaaaacatttgttcccatctccatcaatgtttgattattgatacttctgttgcaattgtttcttccatatagGAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- -tgcccat
- - - - - - - tgttgtc
- - - - - - - - - - - - - - -aaaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - caatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgca