Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaatagaattcattcactttgtgcgtggtttatgtttttcatgatactatgtttataaataatatcaacatgcttgtctaactttcattccaaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCTGGTGACTTGGTTGGGGTGAATAAAGATAGCTACCTGATCTTGGACACTC

Basic information

species Vitis vinifera
transcript Vv05s0020g01180.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g01180.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os06g07630.1 (Oryza sativa), 3'ss of exon 3
gaatagaattcattcactttgtgcgtggtttat-gtttttcatgatactatgtttataaataatatcaacatgcttgtctaactttcattccaaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCTGGTGACTTGGTTGGGGTGAATAAAGATAGCTACCTGATCTTGGACACTC
  |||  |||  ||    ||  || ||  |||| |||    |  | |  |    |  || | || |    |   |   ||   || |  |    ||||||||| || ||  | ||||| |||||||| |||||||||||||| || || |||||||| |||||||| || || ||||| |||||||| ||  ||||||| |
-cataatattttttaggcttaagcatgacttatagttcaaaaaaaaaagagaaatcaaactcatttttgtaaaatatcctttgttcctatttcgattgcagACTATATTCCTTCCTGTGGTTGGGCTAGTTGACCCTGATAAACTCAAGCCTGGTGATTTGGTTGGAGTAAACAAAGACAGCTACCTTATACTGGACACAC

upper sequence: Vv05s0020g01180.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os02g56000.2 (Oryza sativa), 3'ss of exon 3
----gaatagaattcattcactttgtgcgtggtttatgtttttcatgatactatgtttataaataatatcaacatgcttgtctaactttcattccaaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCTGGTGACTTGGTTGGGGTGAATAAAGATAGCTACCTGATCTTGGACACTC
    |  ||  | || | |  |   |     |||| |  | |  || | | | | ||| ||  | ||| |  ||||   || ||| |  |      |||||||||| || ||  | |||||  | ||||||||||||||||| ||||| || ||||| || |||||||| || || ||||| |||||| ||||  | ||||| |
agttgtgtaatactcctaccatgcatataccgtttctcatctcaattaaatt-tatttgtat-tgatacctgcatgg--gtttaattgactactttaattgcagACAATATTCCTTCCTGTAATCGGGCTTGTTGACCCTGAAAAGCTCAAGCCTGGGGATTTGGTTGGAGTCAACAAAGACAGCTACTTGATACTAGACACGC

upper sequence: Vv05s0020g01180.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G032505_T02 (Zea mays), 3'ss of exon 3
---------gaatagaattcattcactttgtgcgtggtttatgtttttcatgatactatgtttataaataatatcaacatgcttgtctaactttcattccaaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCTGGTGACTTGGTTGGGGTGAATAAAGATAGCTACCTGATCTTGGACACTC
          |||  ||  | | |  ||| ||| |||| |    |||   | ||   ||     ||| |  | | || ||  | || |  |||   ||    ||||||||| || ||  | |||||||||||||| || |||||||| ||||| || ||||||||  ||||||| || ||||||||||||||||| ||  | || ||  
aatctaaagcaatgaaaaac-tgccttttatgcatggtcttgagtttaagtaatcaaat-----taactgctgtaaa-atcttagttt--cttgtcttgatgattgcagACTATATTCCTTCCTGTTGTTGGGCTAGTGGACCCTGACAAGCTAAAGCCTGGTGATCTGGTTGGAGTCAATAAAGATAGCTACCTTATACTAGATACAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26259299|gb|CA810362.1|CA810362
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAAGCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349808820|gb|FQ406670.1|FQ406670
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349812353|gb|FQ406374.1|FQ406374
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349808282|gb|FQ403469.1|FQ403469
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349833057|gb|FQ416435.1|FQ416435
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|351026753|gb|FQ436406.1|FQ436406
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349812105|gb|FQ410902.1|FQ410902
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|351026800|gb|FQ436453.1|FQ436453
EST:     ACTCCCAAAGAAAAGGAAAATGCGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349816275|gb|FQ399385.1|FQ399385
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAGGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349811569|gb|FQ409565.1|FQ409565
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349818668|gb|FQ403502.1|FQ403502
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349815538|gb|FQ400694.1|FQ400694
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349818769|gb|FQ409303.1|FQ409303
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349814178|gb|FQ414797.1|FQ414797
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349809052|gb|FQ407501.1|FQ407501
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349810100|gb|FQ401546.1|FQ401546
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|351037334|gb|FQ460533.1|FQ460533
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349815049|gb|FQ410272.1|FQ410272
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAGGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349814278|gb|FQ398704.1|FQ398704
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|351012252|gb|FQ426974.1|FQ426974
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349807880|gb|FQ402271.1|FQ402271
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|351033839|gb|FQ447877.1|FQ447877
EST:     ACTCCCAAAGAAAAGGAAAATGCGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349809200|gb|FQ398973.1|FQ398973
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ATGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349822022|gb|FQ408351.1|FQ408351
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349811159|gb|FQ406103.1|FQ406103
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349822547|gb|FQ412822.1|FQ412822
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|351043388|gb|FQ451440.1|FQ451440
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|351024771|gb|FQ430596.1|FQ430596
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349819018|gb|FQ411713.1|FQ411713
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|351023074|gb|FQ430949.1|FQ430949
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349818376|gb|FQ409151.1|FQ409151
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|351047310|gb|FQ451822.1|FQ451822
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349820629|gb|FQ408458.1|FQ408458
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|351023695|gb|FQ448246.1|FQ448246
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349818006|gb|FQ407995.1|FQ407995
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|351012427|gb|FQ427028.1|FQ427028
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349814949|gb|FQ410172.1|FQ410172
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349809023|gb|FQ407472.1|FQ407472
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349817520|gb|FQ407310.1|FQ407310
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|110699646|gb|EE076827.1|EE076827
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|351037562|gb|FQ462545.1|FQ462545
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|351041131|gb|FQ444108.1|FQ444108
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349816463|gb|FQ403838.1|FQ403838
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349817057|gb|FQ399804.1|FQ399804
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAGGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|351040135|gb|FQ425221.1|FQ425221
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349814705|gb|FQ409928.1|FQ409928
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349815856|gb|FQ401012.1|FQ401012
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|351054548|gb|FQ452024.1|FQ452024
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349816484|gb|FQ403859.1|FQ403859
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|352798843|gb|FQ478478.1|FQ478478
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349822553|gb|FQ412828.1|FQ412828
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
EST: gi|349833224|gb|FQ416602.1|FQ416602
EST:     ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAG                         ACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT
genomic: ACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGgtgaaccagc ... caaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actatgtttataaataatatcaacatgcttgtctaactttcattccaaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCTGGTGACTTGGTTGGGGTGAATAAAGATAGCTACCTGATCTTGGACACTC
                              gtctaac  putative branch site (score: 2)
                                    ctttcattcc  CT-rich tract
      tttataaataatatca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gaatagaattcattcactttgtgcgtggtttatgtttttcatgatactatgtttataaataatatcaacatgcttgtctaactttcattccaaattgcagACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCTGGTGACTTGGTTGGGGTGAATAAAGATAGCTACCTGATCTTGGACACTC

-aatagaa
- - - - - cattcac
- - - - - - - - - - -tgcgtgg
- - - - - - - - - - - - - - - - - - tttcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgct