Sequence
atgc intronic sequence ATGC exonic sequencegtaagttaaatatgtcatttattttcatttgctaactctcttaaatacaagtttgatgtttcttttagttgatcatttgtgattgttcgtaatgtccaccttcttcttgcttcagGGTGCGCAAACTGATAGTTTGCCTTATGTATATTATACACCTAGCTATGGATATGCACAGTCACCATACAACCCATACAATCCTTACATACCTGGTGCCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g00460.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G36110.1 (Glycine max), 3'ss of exon 4
gtaagttaaatatgtcatttattttcatttgctaactctcttaaatacaagtttgatgtttcttttagttgatcatttgtgattgttcgtaatgtccaccttcttcttgcttcagGGTGCGCAAACTGATAGTTTGCCTTATGTATATTATACACCTAGCTATGGATATGCACAGTCACCATACAACCCATACAATCCTTACATACCTGGTGCCA
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-----------------------gtgagt--ctagttctcctctacttgtgtat-atgtgtcatatgctgggttg---aaagctgatttgaatg----cttgttctttgc--cagGGTGCACAAAACGAAAGTTTTCCATATATATATTATACACCTAGCTATGGATTTGCACAGTCTCCATACAATCCATACAATCCTTATATTCCTGGTGCAA
upper sequence: Vv05s0020g00460.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA15G14490.1 (Glycine max), 3'ss of exon 4
gtaagttaaatatgtcatttattttcatttgctaactctcttaaatacaagtttgatgtttcttttagttgatcatttgt--gattgttcgtaatgtccaccttctt--cttgcttcagGGTGCGCAAACTGATAGTTTGCCTTATGTATATTATACACCTAGCTATGGATATGCACAGTCACCATACAACCCATACAATCCTTACATACCTGGTGCCA------
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----------------------------------------------gtaagtttaacctctgtttcactctatcctaagttgggtcatggctgatttttatgtttctgttttttttcagGGTGCACAAAATGAAAGTTTTCCGTATGTATATTATA------GCTATGGATATGCACAGTCTCCATACAATCCATACAATCCTTACATTCCTGGTGCTATGATTG
upper sequence: Vv05s0020g00460.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA09G03590.1 (Glycine max), 3'ss of exon 2
gtaagttaaatatgtcatttattttcatttgctaactctcttaaatacaagtttgatgtttc-ttttagttgatcatttgtgattgttcgtaatgtccaccttctt---cttgcttcagGGTGCGCAAACTGATAGTTTGCCTTATGTATATTATACACCTAGCTATGGATATGCACAGTCACCATACAACCCATACAATCCTTACATACCTGGTGCCA------
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-----------------------------------gtaagtttaacttctgtgttctgtttcactctatatcctaagttggggcagtggctgatttttatgtttctggttttttttcagGGTGCACAAAATGAAAGTTTGCCGTATGTATATTATA------ACTATGGATATGCACAGTCTCCATACAATCCATATAATCCTTACATTCCTGGTGCTATGATTG
upper sequence: Vv05s0020g00460.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G48110.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaagttaaatatgtcatttattttcatttgctaactctcttaaatacaagtttgatgtttcttttagttgatcatttgtgattgtt--cgtaatgtccaccttcttcttgcttcagGGTGCGCAAACTGATAGTTTGCCTTATGTATATTATACACCTAGCTATGGATATGCACAGTCACCATACAACCCATACAATCCTTACATACCTGGTGCCA
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---------------gtactaatctcggacataaagacttctcattaatcgttgatttgttcttatacat-----tttgtatttgttgacatgatatcc-tttttttgtttctccagGGTGGGCAGAATGAAAATTCTCCCTATATATGCTATACACCTAGTTATGGATATGCACAGTCTCCTTATAATCCATTCAATCCTTACATACCTGGCGCTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161720955|gb|FC070341.1|FC070341EST: ATGACCACCATAGGATTTTTGGTCTGGATGGTCCAGATATCCAGTACTCG GGTGCGCAAACTGATAGTTTGCCTTATGTATATTATACACCTAGCTATGGA
genomic: ATGACCACCATAGGATTTTTGGTCTGGATGGTCCAGATATCCAGTACTCGgtaagttaaa ... cttgcttcagGGTGCGCAAACTGATAGTTTGCCTTATGTATATTATACACCTAGCTATGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcttttagttgatcatttgtgattgttcgtaatgtccaccttcttcttgcttcagGGTGCGCAAACTGATAGTTTGCCTTATGTATATTATACACCTAGCTATGGATATGCACAGTCACCATACAACCCATACAATCCTTACATACCTGGTGCCA
agttgat putative branch site (score: 5)
tgtccaccttcttctt putative PPT
atcattt TA-rich tract