1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gctagattgacatgctagtcattgactcttctgccttgatgtaatttatctattttggtactcttcattttccttacttttgttttgctctctcttgcagCAATTTTTGACTTTACAGCAATCTCTTCTGTCTCAGCTTGGTCGCCAACAATCAAGCCA
species | Vitis vinifera |
transcript | Vv04s0210g00220.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCAAAATCCAGAATTTCTTCGTCAGTTGACTTCACCAGAGACAATGCAG CAATTTTTGACTTTACAGCAATCTCTTCTGTCTCAGCTTGGTCGCCAACAAEST: gi|110695633|gb|EE073874.1|EE073874
genomic: TGCAAAATCCAGAATTTCTTCGTCAGTTGACTTCACCAGAGACAATGCAGgtatgtagtt ... tctcttgcagCAATTTTTGACTTTACAGCAATCTCTTCTGTCTCAGCTTGGTCGCCAACAA
EST: TGCAAAATCCAGAATTTCTTCGTCAGTTGACTTCACCAGAGACNATGCAG CAATTTTTGACTTTACAGCAATCTCTTCTGTCTCAGCTTGGTCGCCA-CAAEST: gi|110360433|gb|EC923529.1|EC923529
genomic: TGCAAAATCCAGAATTTCTTCGTCAGTTGACTTCACCAGAGACAATGCAGgtatgtagtt ... tctcttgcagCAATTTTTGACTTTACAGCAATCTCTTCTGTCTCAGCTTGGTCGCCAACAA
EST: GCAAAATCCAGGAATTTCTTCGTCAGTTGACTTCACCAGAGACAATGCAG CAATTTTTGACTTTACAGCAATCTCTTCTGTCTCAGCTTGGTCGCCAACAAEST: gi|30135176|gb|CB920514.1|CB920514
genomic: GCAAAATCCA-GAATTTCTTCGTCAGTTGACTTCACCAGAGACAATGCAGgtatgtagtt ... tctcttgcagCAATTTTTGACTTTACAGCAATCTCTTCTGTCTCAGCTTGGTCGCCAACAA
EST: TGCAAAATCCAGAATTTCTTCGTCAGTTGACTTCACCAGAGACAATGCAG CAATTTTTGACTTTACAGCAATCTCTTCTGTCTCAGCTTGGTCGCCAACAAEST: gi|111125152|gb|EE253737.1|EE253737
genomic: TGCAAAATCCAGAATTTCTTCGTCAGTTGACTTCACCAGAGACAATGCAGgtatgtagtt ... tctcttgcagCAATTTTTGACTTTACAGCAATCTCTTCTGTCTCAGCTTGGTCGCCAACAA
EST: TGCAAAATCCAGAATTTNTTCGTCAGTTGACTTCACCAGAGACAATGCAG CAATTTTTGACTTTACAGCAATCTCTTCTGTCTCAGCTTGGTCGCCAACAAEST: gi|110385709|gb|EC950257.1|EC950257
genomic: TGCAAAATCCAGAATTTCTTCGTCAGTTGACTTCACCAGAGACAATGCAGgtatgtagtt ... tctcttgcagCAATTTTTGACTTTACAGCAATCTCTTCTGTCTCAGCTTGGTCGCCAACAA
EST: TGCAAAATCCAGAATTTCTTCGTCAGTTGACTTCACCAGAGACAATGCAG CAATTTTTGACTTTACAGCAATCTCTTCTGTCTCAGCTTGGTCGCCAACAA
genomic: TGCAAAATCCAGAATTTCTTCGTCAGTTGACTTCACCAGAGACAATGCAGgtatgtagtt ... tctcttgcagCAATTTTTGACTTTACAGCAATCTCTTCTGTCTCAGCTTGGTCGCCAACAA
ttatctattttggtactcttcattttccttacttttgttttgctctctcttgcagCAATTTTTGACTTTACAGCAATCTCTTCTGTCTCAGCTTGGTCGCCAACAATCAAGCCA
tccttac putative branch site (score: 2)
tactcttcattttcct CT-rich tract
ttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctagattgacatgctagtcattgactcttctgccttgatgtaatttatctattttggtactcttcattttccttacttttgttttgctctctcttgcagCAATTTTTGACTTTACAGCAATCTCTTCTGTCTCAGCTTGGTCGCCAACAATCAAGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - -acatgct
- - - - - - - - - -cattgac
- - - - - - - - - - - - - - -tctgcct