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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacactcatcagctgcactatctttatgatactccaaagtttcaactccatgaattaaggatactgagttggattgatgctctgctatttacaattccaacttcatttggttttccagTGGAGGAATTTGACTATGAAGGCCTGTGTAAAGCACTTGAGCAGCTTTCAGATTTTGAAAAAAGGGCAAACTCTAGAGTGATTGAGTCTGGAGTACTTAA

Basic information

species Vitis vinifera
transcript Vv04s0159g00050.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0159g00050.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT5G32470.1 (Arabidopsis thaliana), 3'ss of exon 4
---------gtacactcatcagctgcactatctttatgatactccaaagtttcaactccatgaattaaggatactgagttggattgatgctctgctatttacaattccaacttcattt------ggttttccagTGGAGGAATTTGACTATGAAGGCCTGTGTAAAGCACTTGAGCAGCTTTCAGATTTTGAAAAAAGGGCAAACTCTAGAGTGATTGAGTCTGGAGTACTTAA
         ||  |||  |      |||  | || | ||   | | ||  | |    || |  ||  ||    ||| ||    |||    | |     | |   |   || ||  ||         |||| ||| |||  | ||||||||||||||  | ||||||||||| |||||||||||||||||||| |||  ||||||   | |||||||||||||||| ||||| ||
gtcagacttgtttacttttagtggacacagttttaacgactatactaatctacttggccttttatagagtg-gctgggtctttttgtctgtttttctctcaatgtggtaaatttgttcttccaatattttgcagCGGACAAGTTTGACTATGAAGGTTTATGTAAAGCACTAGAGCAGCTTTCAGATTTTGAGAAAGAGGCAAATAATCGAGTGATTGAGTCTGGTGTACTCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgagttggattgatgctctgctatttacaattccaacttcatttggttttccagTGGAGGAATTTGACTATGAAGGCCTGTGTAAAGCACTTGAGCAGCTTTCAGATTTTGAAAAAAGGGCAAACTCTAGAGTGATTGAGTCTGGAGTACTTAA
        gattgat  putative branch site (score: 4)
                                               ttttcc  putative PPT
                      tatttacaatt  TA-rich tract