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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcagttctgttcactcttaagatacttcccattcatcaactgctgctttaagttcattttattctctatctgtttcacctataatttttggttaaattatagGTGGTTCATGCCAGTGAATATACTTCTGACTTTTATCATTGGCTCAGCACTTGGTTGGATACTCATAAAAATCACCAGACCACCCCAACATCTACATGCA

Basic information

species Vitis vinifera
transcript Vv04s0044g01850.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110697464|gb|EE074485.1|EE074485
EST:     GTAGCTAGCAACCTGGCCGATACAGTTACAGCTAGTAGTTTGGCTACAAT                         GTGGTTCATGCCAGTGAATATACTTCTGACTTTTATCATTGGCTCAGCACT
genomic: GTAGCTAGCAACCTGGCCGATACAGTTACAGCTAGTAGTTTGGCTACAATgtgagttcag ... taaattatagGTGGTTCATGCCAGTGAATATACTTCTGACTTTTATCATTGGCTCAGCACT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaagttcattttattctctatctgtttcacctataatttttggttaaattatagGTGGTTCATGCCAGTGAATATACTTCTGACTTTTATCATTGGCTCAGCACTTGGTTGGATACTCATAAAAATCACCAGACCACCCCAACATCTACATGCA
                                tataatttttggttaa  TA-rich tract