1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...taacattactcaacatcatccaatgcaggtaaatccctatatcttatatatatttgtatagacatgtgtccttaacattactcaacatcatccaatgcagGTAAATCCCTACTATGACTACGAGGATGTGATTGATTCTGATGAAGAATTGGACTTTAGCAGGAATGATGTACACTCCGCGGATGAAGGTCAATCAGTGC
species | Vitis vinifera |
transcript | Vv04s0044g01770.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
atatatatttgtatagacatgtgtccttaacattactcaacatcatccaatgcagGTAAATCCCTACTATGACTACGAGGATGTGATTGATTCTGATGAAGAATTGGACTTTAGCAGGAATGATGTACACTCCGCGGATGAAGGTCAATCAGTGC
ccttaac putative branch site (score: 3)
tatttgtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taacattactcaacatcatccaatgcaggtaaatccctatatcttatatatatttgtatagacatgtgtccttaacattactcaacatcatccaatgcagGTAAATCCCTACTATGACTACGAGGATGTGATTGATTCTGATGAAGAATTGGACTTTAGCAGGAATGATGTACACTCCGCGGATGAAGGTCAATCAGTGC
- - - - ctcaaca
- - - - - caacatc
- - - - - - - -tcatcca
- - - - - - - - - - - - gcaggta
- - - - - - - - - - - - - - - - - ccctata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agacatg