Sequence
atgc intronic sequence ATGC exonic sequence...tatttcctattatcaatgcatagactctgtcaattattctaaatgttgcatgtgttttctctggttggtcattatttatctaaactctatgaattgctagGTTGCTGTATATGCAGAATTTCGAAGAGACTGGGCTGAAGCTTTGAGGTTTTATGAAGATGCATATCACACACTGCGAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0044g01720.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA09G32860.1 (Glycine max), 3'ss of exon 3
tatttcctattatcaatgcatagactctgtcaattattctaaatgt-tgcatgtgttttctctggttggtcattatttatctaaactctatgaattgctagGTTGCTGTATATGCAGAATTTCGAAGAGACTGGGCTGAAGCTTTGAGGTTTTATGAAGATGCATATCACACACTGCGAGAG
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-ttgtgccatttgttgttcggggacttgtgaggttgcgttgtttatgtttttatcaaaataaaaattgtgcattatttatttagatgccatgaattgctagGTTGCTGTATATGCAGAATTCCGAAGTGACTGGACTGAAGCACTGAAATTTTATGAGGAGGCCTATCATACACTGCGAGAG
upper sequence: Vv04s0044g01720.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA16G21610.1 (Glycine max), 3'ss of exon 3
-tatttcctattatcaatgcatagactctgtcaattattctaaatgttgcatgtgttttctctggttggtcattatttatctaaactctatgaattgctagGTTGCTGTATATGCAGAATTTCGAAGAGACTGGGCTGAAGCTTTGAGGTTTTATGAAGATGCATATCACACACTGCGAGAG
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gtaccctttgttgttcgggaacttgtctgagtttgtgttgtttatgtttt-tatcaaaataaaaattgtacattatttatttagatgccatgaattgctagGTTGCTGTATATGCAGAATTCCGAAGTGATTGGACTGAAGCAATGAAATTTTATGAGGAGGCCTATCATACACTGCGAGAG
upper sequence: Vv04s0044g01720.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT5G65950.1 (Arabidopsis thaliana), 3'ss of exon 4
tatttcctattatcaatgcatagactctgtc-aattattctaaatgttgcatgtgttttctctggttggtcattatttatctaaactctatgaattgctagGTTGCTGTATATGCAGAATTTCGAAGAGACTGGGCTGAAGCTTTGAGGTTTTATGAAGATGCATATCACACACTGCGAGAG
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-gtaagcttttctcgttacctctgctaagtctaatcattttgt---tccaaagtatctg----ggaaaaggaaggctcattcatgccatg---actgctagGTCGCTGTATATGCAGAGTTTCGTAGAGATTGGGGTGAAGCACTGAAGTTTTATGAAGACGCATACCATTCCTTGCACGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgcatgtgttttctctggttggtcattatttatctaaactctatgaattgctagGTTGCTGTATATGCAGAATTTCGAAGAGACTGGGCTGAAGCTTTGAGGTTTTATGAAGATGCATATCACACACTGCGAGAG
atctaaa putative branch site (score: 3)
tcattatttatctaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tatttcctattatcaatgcatagactctgtcaattattctaaatgttgcatgtgttttctctggttggtcattatttatctaaactctatgaattgctagGTTGCTGTATATGCAGAATTTCGAAGAGACTGGGCTGAAGCTTTGAGGTTTTATGAAGATGCATATCACACACTGCGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - -caatgca
- - - - - - - - - - - - - ctgtcaa
- - - - - - - - - - - - - - - - - - - - - - -ttgcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggttggt