Sequence
atgc intronic sequence ATGC exonic sequencegtacttttttccatttcctgtcctgccacacactcaatccaaagctcctcttttctaatgaatcaattaattattatttaataataaaataaatccacaagtgggattcttaaccgctgattctttatactagtcagGTCAGTCCGGAGCTTTATGGTGACAGCAGACCCAGATTATTCACTTATTGGACG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0043g00560.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA19G43900.1 (Glycine max), 3'ss of exon 6
----gtacttt-tttccatttcctgtcctgccac-acactcaat--ccaaa--gctcctcttttctaatgaatcaattaattat-tatttaataataaaataaatccacaagtgggattcttaaccgctgattctttatactagtcagGTCAGTCCGGAGCTTTATGGTGACAGCAGACCCAGATTATTCACTTATTGGACG
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gtatatattctgtctaaattcaatgtggagaagctaagtttaattaccaaatagtgcatatatatatatatatatatctcttatatggtttttggtggattattaagaaatgttggtctctaaatctttgattgttc-tactagtcagGTCAGTCCGGAGCTTTATGGTGACAGCAGGCCCAGATTATTCACTTACTGGACG
upper sequence: Vv04s0043g00560.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G41280.1 (Glycine max), 3'ss of exon 4
gtacttttttccatttcctgtcctgccacacactcaatccaaagctcctcttttcta--atgaatcaattaattattatttaataataaaataaatccacaagtgggattcttaaccgctgattctttatactagtcagGTCAGTCCGGAGCTTTATGGTGACAGCAGACCCAGATTATTCACTTATTGGACG
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--------------------------------------ctagatttaccaaataatagtatatatctctctcttaatcttttggtttatggtggaattaagaaatggtctctaaagctttgattgttc-tactagtcagGTCAGTCCGGAGCTTTATGGTGACAGCAGGCCCAGATTATTCACTTACTGGACG
upper sequence: Vv04s0043g00560.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA20G36380.1 (Glycine max), 3'ss of exon 4
gtacttttttccatttcctgtcctgccacacactcaatccaaagctcctcttttctaatgaatcaattaattattatttaataataaaataaatccacaagtgggattcttaaccgctgattctttatactagtcagGTCAGTCCGGAGCTTTATGGTGACAGCAGACCCAGATTATTCACTTATTGGACG
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--------------------atacacggcacattacattgcacactcaatgtgcgtgaaggaacagaaaattctaattttataaaatagt----------------ctctgaagctttgatcattc-tactagtcagGTCAGTCCGGAGCTCTATGGTGACAGCAGACCAAGATTGTTCACTTATTGGACG
upper sequence: Vv04s0043g00560.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G31140.1 (Glycine max), 3'ss of exon 4
gtacttttttccatttcctgtcctgccacacactcaatccaaagctc-ctcttttctaatgaatcaattaattattatttaataataaaataaatccacaagtgggattcttaaccgctgattctttatactagtcagGTCAGTCCGGAGCTTTATGGTGACAGCAGACCCAGATTATTCACTTATTGGACG
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-------------------------------------tacacggcacattacattgcaccgaatgtgcatgcgtgtaggaacataaatactaattttatcaaatagtctctgaagctttgatcattc-tactagtcagGTTAGTCCGGAGCTCTATGGTGACAACAGACCCAGATTGTTCACTTATTGGACG
upper sequence: Vv04s0043g00560.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT5G18460.1 (Arabidopsis thaliana), 3'ss of exon 4
gtacttttttccatttcctgtcctgccacacactcaatccaaagctcctcttttctaatgaatcaattaattattatttaataataaaataaatccacaagtgggattcttaaccgctgattctttatactagtcagGTCAGTCCGGAGCTTTATGGTGACAGCAGACCCAGATTATTCACTTATTGGACG
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gtactgtttttactgttttacccttctcataatactgttttagtttacgttactttcataagtca--taactactgttaagtgtacatgtttaagaaaaggattatatctaaagctgagattgttc-tactagtcagGTCAGTCCGGAGCTGTATGGTGACAACAGACCAAGATTGTTCACTTATTGGACG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aataaaataaatccacaagtgggattcttaaccgctgattctttatactagtcagGTCAGTCCGGAGCTTTATGGTGACAGCAGACCCAGATTATTCACTTATTGGACG
ttctttat CT-rich tract
attctttata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacttttttccatttcctgtcctgccacacactcaatccaaagctcctcttttctaatgaatcaattaattattatttaataataaaataaatccacaagtgggattcttaaccgctgattctttatactagtcagGTCAGTCCGGAGCTTTATGGTGACAGCAGACCCAGATTATTCACTTATTGGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT