Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagttgaagatgtacactttcagattgattgcttatctttgtttgggtcaaattctgacttatcggtcatgcagGGCTTAATCCGGCTTCTTTCAATATGTGCAAAGGGGTCTCCCTTAGGAGCCAAAACTTTGCTTCACCTTGAAATCAGTGGCATTCTTAAAGATATACTTC

Basic information

species Vitis vinifera
transcript Vv04s0023g03830.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g03830.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G374574_T02 (Zea mays), 3'ss of exon 5
------gtagttgaagatgtacactttcagattgattgct------tatcttt-----gtttgggtcaaattctgacttatcggtcatgcagGGCTTAATCCGGCTTCTTTCAATATGTGCAAAGGGGTCTCCCTTAGGAGCCAAAACTTTGCTTCACCTTGAAATCAGTGGCATTCTTAAAGATATACTTC
      |   ||  |  |  | ||  |   |||| |||||        |||||       ||  |  ||| |  |  |   || |  | |||||||||||||| ||||| |||||||||||||  || || |   | | ||  |||||  | ||||  ||||  ||||| |||| |||||||||||| ||| 
gtatgggccattttattttgatacccttttattgtttgctgtggcccctctttctcacacttatgctaaaattaggttgcacgctttt-cagGGCTTAATCCGTCTTCTCTCAATATGTGCAAGTGGATCCCTGCTGGCAGTTAAAACACTACTTCTTCTTGGGATCAGCGGCACTCTTAAAGATATCCTTT

upper sequence: Vv04s0023g03830.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA04G00530.1 (Glycine max), 3'ss of exon 4
gtagttgaagatgtacactttcagattgat-tgcttatctttgtttgggtcaaat-tctgactt-atcggt-catgcagGGCTTAATCCGGCTTCTTTCAATATGTGCAAAGGGGTCTCCCTTAGGAGCCAAAACTTTGCTTCACCTTGAAATCAGTGGCATTCTTAAAGATATACTTC
|||  || |    |   |  | |   ||||    ||||| ||   |||||      | |||||| || ||| ||||||||| || ||||| |||||||| | ||||||||  ||||||||  | ||||| ||||| ||||||| ||||| ||  |||||||||||||||||||||||  
gtaagtgcaatctttgccactaaatctgatacttttatcctttggtgggttgttcctttgacttcattggtgcatgcagGGTTTGATCCGCCTTCTTTCCACATGTGCAAGTGGGTCTCCTCTTGGAGCTAAAACGTTGCTTCTCCTTGGAACTAGTGGCATTCTTAAAGATATACTAT

upper sequence: Vv04s0023g03830.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA06G00600.2 (Glycine max), 3'ss of exon 4
gtagttgaagatgtacactttcagattgat-tgcttatctttgtttgggtcaaat-tctgactt-atcggt-catgcagGGCTTAATCCGGCTTCTTTCAATATGTGCAAAGGGGTCTCCCTTAGGAGCCAAAACTTTGCTTCACCTTGAAATCAGTGGCATTCTTAAAGATATACTTC
|||  || |    |   |  | |   |||| |  ||||| ||   |||||      | |||||| || ||| | ||||||| || ||||| |||||||| | ||||||||  ||||||||  | ||||| ||||| ||||||| || || |   |||||||| ||||||||||||||  
gtaagtgcaatctttgccactaaatctgatatttttatcctttggtgggttgttcatttgacttcattggtgcttgcagGGTTTGATCCGCCTTCTTTCCACATGTGCAAGTGGGTCTCCTCTTGGAGCTAAAACGTTGCTTCTCCATGGAGCTAGTGGCATACTTAAAGATATACTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagattgattgcttatctttgtttgggtcaaattctgacttatcggtcatgcagGGCTTAATCCGGCTTCTTTCAATATGTGCAAAGGGGTCTCCCTTAGGAGCCAAAACTTTGCTTCACCTTGAAATCAGTGGCATTCTTAAAGATATACTTC
                                 ttctgac  putative branch site (score: 2)
             ttatcttt  TA-rich tract