Sequence
atgc intronic sequence ATGC exonic sequence...atttctttcttaggaaactgtaggctatatgcttgaggactcatctgagttttatgtcagttactatgggagattaattattgtttgtgttgtgttacagTCATGAACTGAGAACACCTATGGCTGCAGTGATTGGGTTGCTGGACATTCTTATATGCGATGATTGTCTCACAAATGAACAATATGCAACAGTTACCCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g03680.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA01G36950.1 (Glycine max), 3'ss of exon 4
atttctttcttaggaaactgtaggctatatgcttgaggactcatctgagttttatgtcagttactatgggagat------taattattgtttgtgttgtgttacagTCATGAACTGAGAACACCTATGGCTGCAGTGATTGGGTTGCTGGACATTCTTATATGCGATGATTGTCTCACAAATGAACAATATGCAACAGTTACCCAG
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-----ctaatgaccaatcttttcattacgt-ttacaagtctgagatgatctttccattgagaattaacaaatgtgcttcatggtttctttctttggtgtattacagTCATGAACTGAGGACACCTATGGCAGCAGTTATTGGGTTGCTTGACATTCTTATATCAGATGACTGTCTCACAAATGAACAATATTCAACAGTTACTCAA
upper sequence: Vv04s0023g03680.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA11G08310.1 (Glycine max), 3'ss of exon 4
---atttctttcttaggaaactgtaggctatatgcttgaggactcatctgagttttatgtcagttactatgggagattaattattgtttgtgttgtgttacagTCATGAACTGAGAACACCTATGGCTGCAGTGATTGGGTTGCTGGACATTCTTATATGCGATGATTGTCTCACAAATGAACAATATGCAACAGTTACCCAG
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ctaattacctatcttttcatttg--gtttacaagtctgagatgatcttttcattgagaattcacaaatgtgcttcatggtttctttctt-tggtgtattacagTCATGAACTGAGGACACCTATGGCAGCAGTAATTGGGTTGCTTGACATTCTCATATCAGATGACTGTCTCACAAATGAACAATATTCAACAGTTACTCAA
upper sequence: Vv04s0023g03680.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA02G05220.1 (Glycine max), 3'ss of exon 4
---atttctttcttaggaaactgtaggctatatgcttgaggactcatctgagttttatgtcagttactatgggagattaattattgtttgtgttgtgttacagTCATGAACTGAGAACACCTATGGCTGCAGTGATTGGGTTGCTGGACATTCTTATATGCGATGATTGTCTCACAAATGAACAATATGCAACAGTTACCCAG
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aggattaccaatccgtgtcatt-tgattcacatgtataagaagatccttcctttgtgtgttcacaaatgtgcttaaatagttttt-tttgggt-gctttacagTCATGAATTGAGGACACCAATGGCAGCAGTAATCGGGTTACTTGACATTCTTATATCTGATGACCGTCTCACAAATGAGCAATGTGCAACAGTTACTCAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgagttttatgtcagttactatgggagattaattattgtttgtgttgtgttacagTCATGAACTGAGAACACCTATGGCTGCAGTGATTGGGTTGCTGGACATTCTTATATGCGATGATTGTCTCACAAATGAACAATATGCAACAGTTACCCAG
gattaat putative branch site (score: 3)
agattaattattgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atttctttcttaggaaactgtaggctatatgcttgaggactcatctgagttttatgtcagttactatgggagattaattattgtttgtgttgtgttacagTCATGAACTGAGAACACCTATGGCTGCAGTGATTGGGTTGCTGGACATTCTTATATGCGATGATTGTCTCACAAATGAACAATATGCAACAGTTACCCAG
- - - - - -aggaaac
- - - - - - - - - - - - - - -tgcttga
- - - - - - - - - - - - - - - - - - - actcatc