Sequence
atgc intronic sequence ATGC exonic sequence...ttttagtttctgagtattttcaagaaagaatattccagtaggtttcatgagtgttacaacccaatatcctattgacaatacaactttttggcattctcagGTTTCTTTGTGCACTAATCCTATTTGGGTTATAAAAACAAGGCTGCAGCTTGAGACTCCTCTTCATCAAACCCGACCATACTCTGGGCTTTATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g02600.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA16G24580.2 (Glycine max), 3'ss of exon 3
ttttagtttctgagtattttcaagaaagaatattccagtaggtttcatgagtgttacaacccaatatcctattgacaatacaactttttggcattc-tcagGTTTCTTTGTGCACTAATCCTATTTGGGTTATAAAAACAAGGCTGCAGCTTGAGACTCCTCTTCATCAAACCCGACCATACTCTGGGCTTTATG
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-gttggatgcttaggattccaaagccttccaaacatattgtggcacatacctggtctaaattgaaccttcagttattatggtttccattgcctttcatcagGTTTCCTTCTTCACAAATCCTGTATGGCTAGTAAAGACAAGATTGCAGCTTCAAACTCCTCTTCATCAGACACGACCATACTCTGGGGTTTATG
upper sequence: Vv04s0023g02600.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA02G05890.1 (Glycine max), 3'ss of exon 4
ttttagtttctgagtattttcaagaaagaatattccagtaggtttcatgagtgttacaacccaatatcctattgacaatacaactttttggcattc-tcagGTTTCTTTGTGCACTAATCCTATTTGGGTTATAAAAACAAGGCTGCAGCTTGAGACTCCTCTTCATCAAACCCGACCATACTCTGGGCTTTATG
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-gttggatgcttaggattccaaagtcttccaaacatattgtggcacatacctggtctaaactgaaccttcagttattatggtttccattgcctttcgccagGTTTCCTTCTTCACAAATCCAGTATGGCTGGTAAAGACAAGATTGCAGCTTCAAACTCCTCTTCATCAGACACGACCATACTCTGGGGTTTATG
upper sequence: Vv04s0023g02600.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT5G66380.1 (Arabidopsis thaliana), 3'ss of exon 4
ttttagtttctgagtattttcaagaaagaatattccagtaggtttcatgagtgttacaac---ccaatatcctattga---caata-caactttttggcattctcagGTTTCTTTGTGCACTAATCCTATTTGGGTTATAAAAACAAGGCTGCAGCTTGAGACTCCTCTTCATCAAACCCGACCATACTCTGGGCTTTATG
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----------------------------gtgagtctaacaggcgccataaacatctcatttctcctatgttttttcgatctcagtatcaagggaatgatgctttcagGTCTGTTTATGCACAAATCCTATTTGGCTTGTCAAAACAAGGTTACAGCTTCAGACACCTCTTCATCAAACTCAACCATACTCAGGGCTATTAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catgagtgttacaacccaatatcctattgacaatacaactttttggcattctcagGTTTCTTTGTGCACTAATCCTATTTGGGTTATAAAAACAAGGCTGCAGCTTGAGACTCCTCTTCATCAAACCCGACCATACTCTGGGCTTTATG
tattgac putative branch site (score: 2)
cattctc putative PPT
aacttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttagtttctgagtattttcaagaaagaatattccagtaggtttcatgagtgttacaacccaatatcctattgacaatacaactttttggcattctcagGTTTCTTTGTGCACTAATCCTATTTGGGTTATAAAAACAAGGCTGCAGCTTGAGACTCCTCTTCATCAAACCCGACCATACTCTGGGCTTTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - -gaaagaa
- - - - - - - - - - - - - - - - - - - - - - -catgagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - caaccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatacaa