1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...acctttatgaatgctctgcttaccaagttccattttggccccagcatttctgctatttgtcatctgtgctctaatatttgccatgccttgttttcctcagAGTTGGCACGACGAGAGCGGCAATTAAGGAAAAGAAGGCAGAGATGGGTTTGGGGTTCAATTGCTGCTGTCATTACAGTTGGAACTGCAGCCCTAGCATG
species | Vitis vinifera |
transcript | Vv04s0023g02110.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTATGATGCTGTGAACCGGGAGATGTTTCAGAGGAACCAAGAAGGTTTAG AGTTGGCACGACGAGAGCGGCAATTAAGGAAAAGAAGGCAGAGATGGGTTTEST: gi|45771118|gb|CN006970.1|CN006970
genomic: TTATGATGCTGTGAACCGGGAGATGTCTCAGAGGAACCAAGAAGGTTTAGgtaagatttc ... ttttcctcagAGTTGGCACGACGAGAGCGGCAATTAAGGAAAAGAAGGCAGAGATGGGTTT
EST: TTATGATGCTGTGAACCGGGAGATGTCTCAGAGGAACCAAGAAGGTTTAG AGTTGGCACGACGAGAGCGGCAATTAAGGAAAAGAAGGCAGAGATGGGTTTEST: gi|46919128|gb|CN548457.1|CN548457
genomic: TTATGATGCTGTGAACCGGGAGATGTCTCAGAGGAACCAAGAAGGTTTAGgtaagatttc ... ttttcctcagAGTTGGCACGACGAGAGCGGCAATTAAGGAAAAGAAGGCAGAGATGGGTTT
EST: TTATGATGCTGTGAACCGGGAGATGTTTCAGAGGAACCAAGAAGGTTTAG AGTTGGCACGACGAGAGCGGCAATTAAGGAAAAGAAGGCAGAGATGGGTTT
genomic: TTATGATGCTGTGAACCGGGAGATGTCTCAGAGGAACCAAGAAGGTTTAGgtaagatttc ... ttttcctcagAGTTGGCACGACGAGAGCGGCAATTAAGGAAAAGAAGGCAGAGATGGGTTT
atttctgctatttgtcatctgtgctctaatatttgccatgccttgttttcctcagAGTTGGCACGACGAGAGCGGCAATTAAGGAAAAGAAGGCAGAGATGGGTTTGGGGTTCAATTGCTGCTGTCATTACAGTTGGAACTGCAGCCCTAGCATG
ctctaat putative branch site (score: 3)
tgccttgttttcctc putative PPT
tctaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acctttatgaatgctctgcttaccaagttccattttggccccagcatttctgctatttgtcatctgtgctctaatatttgccatgccttgttttcctcagAGTTGGCACGACGAGAGCGGCAATTAAGGAAAAGAAGGCAGAGATGGGTTTGGGGTTCAATTGCTGCTGTCATTACAGTTGGAACTGCAGCCCTAGCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - gaatgct
- - - - - - - - - cttacca
- - - - - - - - - - - - - - -ccatttt
- - - - - - - - - - - - - - - - - - ggcccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatgcc