Sequence
atgc intronic sequence ATGC exonic sequencegtatattttattttattttttaatatgggaattttctgtttacccttcacaaaatgacaaaggtttttgttttttatttttttgaactatttcagGCTAAAGCTCTTGCAGAGAAGAATAAACGTGATCTTCTTGCTCAAAGAGAGCAAGCAGAGAGAAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g02070.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G438895_T03 (Zea mays), 3'ss of exon 6
gtatattttattttattttttaatatgggaattttctgtttacccttcacaaaatgacaaaggtttttgttttttatttttttgaactatttcagGCTAAAGCTCTTGCAGAGAAGAATAAACGTGATCTTCTTGCTCAAAGAGAGCAAGCAGAGAGAAAT----------------------------------
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gtatagctgat---actcctctgtggggtttatttcatttttctttccttatgtttgtcgatagtttggtgacacgcacattccctat-tttcagACAAAAGCTCTTGCCGAGAAGAACACGCGGGACCTGCTGGCTCAAAGAGAGCAAGCAGAGAAACATGTAAGACATTTACACACAAAGAACATTCTCTCTG
upper sequence: Vv04s0023g02070.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G438895_T01 (Zea mays), 3'ss of exon 6
gtatattttattttattttttaatatgggaattttctgtttacccttcacaaaatgacaaaggtttttgttttttatttttttgaactatttcagGCTAAAGCTCTTGCAGAGAAGAATAAACGTGATCTTCTTGCTCAAAGAGAGCAAGCAGAGAGAAAT
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gtatagctgat---actcctctgtggggtttatttcatttttctttccttatgtttgtcgatagtttggtgacacgcacattccctat-tttcagACAAAAGCTCTTGCCGAGAAGAACACGCGGGACCTGCTGGCTCAAAGAGAGCAAGCAGAGAAACAT
upper sequence: Vv04s0023g02070.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT4G36520.1 (Arabidopsis thaliana), 3'ss of exon 4
gtatattttattttattttttaatatgggaattttctgtttacccttcacaaaatgacaaaggtttttgttttttatttttttgaactattt-cagGCTAAAGCTCTTGCAGAGAAGAATAAACGTGATCTTCTTGCTCAAAGAGAGCAAGCAGAGAGAAAT
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---------------gtaactgatgcttcaatactcgttttgaaatccacaccat--tgatgatgttagttaacgggcatattgaattcttaacagGCTAAAGCTTTAGCAGAGAAGAACATGCGTGATCTCGTGGCTCAGAGAGAACAAGCAGAGAGAATT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tacccttcacaaaatgacaaaggtttttgttttttatttttttgaactatttcagGCTAAAGCTCTTGCAGAGAAGAATAAACGTGATCTTCTTGCTCAAAGAGAGCAAGCAGAGAGAAAT
ctatttc CT-rich tract
aaaggtttttgttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatattttattttattttttaatatgggaattttctgtttacccttcacaaaatgacaaaggtttttgttttttatttttttgaactatttcagGCTAAAGCTCTTGCAGAGAAGAATAAACGTGATCTTCTTGCTCAAAGAGAGCAAGCAGAGAGAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG