1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atctggggctgctaactgtagtatgttttttatgttatatctgtagtgagctggatccatcaaaacctgcactaacagtatacatccatgttcttaccagCATGAGGTAGCGCATGAAGGTGAGACTGGGAAAGTGTCCAGAGCTGATTTTCATGATCGACTCGGGAGGACAGTCCTTATAATGAGGCCAGGGATGCAG
species | Vitis vinifera |
transcript | Vv04s0023g01720.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGAGACACTCAAATGGAGGGCAACCTATAAGCCTGAGGAGATCCGTTGG CATGAGGTAGCGCATGAAGGTGAGACTGGGAAAGTGTCCAGAGCTGATTTT
genomic: AAGAGACACTCAAATGGAGGGCAACCTATAAGCCTGAGGAGATTCGTTGGgtaagttgga ... ttcttaccagCATGAGGTAGCGCATGAAGGTGAGACTGGGAAAGTGTCCAGAGCTGATTTT
gtgagctggatccatcaaaacctgcactaacagtatacatccatgttcttaccagCATGAGGTAGCGCATGAAGGTGAGACTGGGAAAGTGTCCAGAGCTGATTTTCATGATCGACTCGGGAGGACAGTCCTTATAATGAGGCCAGGGATGCAG
cactaac putative branch site (score: 1)
ttcttacc putative PPT
atcaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctggggctgctaactgtagtatgttttttatgttatatctgtagtgagctggatccatcaaaacctgcactaacagtatacatccatgttcttaccagCATGAGGTAGCGCATGAAGGTGAGACTGGGAAAGTGTCCAGAGCTGATTTTCATGATCGACTCGGGAGGACAGTCCTTATAATGAGGCCAGGGATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - -gggctgc
- - - - - - - - - - - - - - - - - - - - - - - -gagctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatcca