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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgtccataacatgttttcaactcttcacatgaatatatattgttaaacattaagtttcgcatgctatgttgcccaagctcacccatcatgctgtgatgcttctcattcagGTGGCTGATTTTGGTTTGGCTAAGCTGTCTACTGACAATTGCACCCATGTCTCTACACGCGTCATGGGAACATTTGG

Basic information

species Vitis vinifera
transcript Vv04s0023g01570.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g01570.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA11G07180.1 (Glycine max), 3'ss of exon 6
------------------------------------gtatttgtccataacatgttttcaact-cttcacatgaatatatattgttaaacattaagtttcgcatgctatgttgcccaagctcacccatcatgctg-tgatgcttctcattcagGTGGCTGATTTTGGTTTGGCTAAGCTGTCTACTGACAATTGCACCCATGTCTCTACACGCGTCATGGGAACATTTGG
                                    || | |||||| |  || |    | ||  ||||  |   ||  |||| || |||||   | |  | ||  ||||||    ||||  |   |  |||| |   |||| | | |||||||| ||||||||||| ||||||||| || ||||||| |||   || ||||| || || || ||||||||||| || ||
gttcgacatatttacatattatatctatttaattaagtttatgtccaca-tatttacctagctatttcagctatttaattattattcaacat---gctatgaatcttatgttttttaagccaattaagtatgccgacaatgcattttattcagGTTGCTGATTTTGGATTGGCTAAGTTGACTACTGATAATAATACTCATGTATCGACTCGTGTCATGGGAACTTTCGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcgcatgctatgttgcccaagctcacccatcatgctgtgatgcttctcattcagGTGGCTGATTTTGGTTTGGCTAAGCTGTCTACTGACAATTGCACCCATGTCTCTACACGCGTCATGGGAACATTTGG
                    agctcac  putative branch site (score: 3)
                                           cttctcattc  putative PPT