Sequence
atgc intronic sequence ATGC exonic sequencegtaagttcatcttgttcttgcttaatatttgcaattctgttgtttcgagattgagaatctattgattctcagggaccttccagtttaaatttcctcattttctcatgcaaaattaagtgtaataactgttacgcagGTTGCTTGGTTATATAATGTTCGTGGGACTGATGTGTCTTACTGTCCAGTTGTTCATGCATTTGCTATAGTGACATCCAAATCAGCTTTCTTTTATGTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g01300.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA01G38410.4 (Glycine max), 3'ss of exon 4
-------------gtaagttcatcttgttcttgcttaatatttgc--aattctgttgtttcgagattgagaat-----ctattg-attctcagggaccttccagtttaaatttcctcattttctcatgcaaaattaagtgtaataactgttacgcagGTTGCTTGGTTATATAATGTTCGTGGGACTGATGTGTCTTACTGTCCAGTTGTTCATGCATTTGCTATAGTGACATCCAAATCAGCTTTCTTTTATGTTG
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gtaagtgcatcctctagataactcttccttttaacttcttttcccttgacacaaattttctgagtttgaggatattttctgctgcacttgttcatcctttttaagataattttctttattttttccactttttttcaataatgtggctacaatacagGTTGCATGGTTGTATAATATTCGTGGAAGTGATGTGGCCTACTGTCCTGTTGTTCATGCATTTGCTATTGTGACATCCAATTCTGCTTTCATTTATGTGG
upper sequence: Vv04s0023g01300.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA11G06900.1 (Glycine max), 3'ss of exon 4
-----------------gtaagttcatcttgttcttgcttaatatttgcaattctgttgtttcgagattgaga--atctattgattctcagggac-cttccagtttaaatttcctcattttctcatgcaaaattaagtgtaataactgttacgcagGTTGCTTGGTTATATAATGTTCGTGGGACTGATGTGTCTTACTGTCCAGTTGTTCATGCATTTGCTATAGTGACATCCAAATCAGCTTTCTTTTATGTTG
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gtaagatcatcctctctataactcttccttttaatttcttttcccttg--acacaaattttctgagtttgaggctactttctgccgcccttgttcatttttaagatagctttctttattttttcacttcatttccaataacctgactacaatacagGTTGCATGGTTGTATAATATTCGTGGAAGTGATGTGGCCTACTGTCCTGTTGTTCATGCATTTGCTATTGTGACATCCAATTCTGCTTTCATTTATGTGG
upper sequence: Vv04s0023g01300.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT4G36760.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaagttcatcttgttcttgcttaatatttgcaattctgttgtttcgagattgagaatctattgattctcagggaccttccagtttaaatttcctcattttctcatgcaaaattaagtgtaataactgtt--acgcagGTTGCTTGGTTATATAATGTTCGTGGGACTGATGTGTCTTACTGTCCAGTTGTTCATGCATTTGCTATAGTGACATCCAAATCAGCTTTCTTTTATGTTG
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------------------------------------------------------------gtgtgttttcgtagtaaaaagatctctctttttctcagttcagctttggaatgtattttgattgggggtttgatgcagGTTGCTTGGCTATATAATATCCGTGGAACTGATGTTGCTTATTGTCCCGTTGTTCATGCGTTTGCAATCCTTACCACCGACTCTGCGTTTCTCTATGTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161720139|gb|FC065479.1|FC065479EST: GACTCATGCAGGAGAAAGCTCAGGGTATAATTATCACAGCGCTTGATGAG GTTGCTTGGTTATATAATGTTCGTGGGACTGATGTGTCTTACTGTCCAGTT
genomic: GGCTCATGCAGGAGAAAGCTCAGGGTATAATTATCACAGCGCTTGATGAGgtaagttcat ... tgttacgcagGTTGCTTGGTTATATAATGTTCGTGGGACTGATGTGTCTTACTGTCCAGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtttaaatttcctcattttctcatgcaaaattaagtgtaataactgttacgcagGTTGCTTGGTTATATAATGTTCGTGGGACTGATGTGTCTTACTGTCCAGTTGTTCATGCATTTGCTATAGTGACATCCAAATCAGCTTTCTTTTATGTTG
taataac putative branch site (score: 1)
aaaattaagtgtaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagttcatcttgttcttgcttaatatttgcaattctgttgtttcgagattgagaatctattgattctcagggaccttccagtttaaatttcctcattttctcatgcaaaattaagtgtaataactgttacgcagGTTGCTTGGTTATATAATGTTCGTGGGACTGATGTGTCTTACTGTCCAGTTGTTCATGCATTTGCTATAGTGACATCCAAATCAGCTTTCTTTTATGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT