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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgaaggccgtctgtgtctaaccttttgctttctgtaacccaattgtgctaaaggcatatacaagtcaaactactagccacttctaatggtttcactctcttaatttttacttattatgaatccttctccatattgtagGTTTTGAAAGTTCTTTCAGCTTCTCCTTCAGCATATTCTGCTGACCCAAACTCCAAGTTGTCAAGTCCTCCATTGTTGACTGGATTGGCTATTTCATTAG

Basic information

species Vitis vinifera
transcript Vv04s0023g01220.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g01220.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT5G66680.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaagttgaaggccgtctgtgtctaaccttttgctttctgtaacccaattgtgctaaaggcatatacaagtcaaactactagccacttctaatggtttcactctcttaatttttacttat-tatgaatccttctccatattgtagGTTTTGAAAGTTCTTTCAGCTTCTCCTTCAGCATATTCTGCTGACCCAAACTCCAAGTTGTCAAGTCCTCCATTGTTGACTGGATTGGCTATTTCATTAG
|||||| |||   | |      ||    | |||| ||  |||    | |     || | |  || |    ||| |  | || | |  |  | || | |     | | | ||||| || || |||   || | |||||| |  ||||||||||||||||||||||| ||||| ||||| ||||||||| |||||| ||| |||||||| ||||| ||   | | ||||| |   | |||||  |||
gtaagtcgaacatcata-----ctcttttcttgcattgagtagatgactataagtacaagatta-atgtttcatatgaataacta--tacattgatctgggaat-taactttttgctaatctatacctcatgctccat-tcctagGTTTTGAAAGTTCTTTCAGCCTCTCCATCAGCTTATTCTGCTAACCCAAGCTCGAAGTTGTCTAGTCCCCCCCAGCTCACTGGGTCTTCAATTTCGCTAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatggtttcactctcttaatttttacttattatgaatccttctccatattgtagGTTTTGAAAGTTCTTTCAGCTTCTCCTTCAGCATATTCTGCTGACCCAAACTCCAAGTTGTCAAGTCCTCCATTGTTGACTGGATTGGCTATTTCATTAG
                                     tccttctccatatt  CT-rich tract
              tcttaatttttactta  TA-rich tract