Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattccattttctttcttcttttggaatgccattatgctttgtcactatgacttttcttagttgtttgttcattcactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTGCTGAAGATGCACCTGTTGATCAGTTCACTCCACTGGGCCGCATGCTTTA

Basic information

species Vitis vinifera
transcript Vv04s0023g00600.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g00600.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA18G47770.1 (Glycine max), 3'ss of exon 4
---------gtattccattt-tctttcttcttttgga-atgccattatgctttgtcacta-tgacttttcttagttgtttgttcattcacta--accagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTGCTGAAGATGCACCTGTTGATCAGTTCACTCCACTGGGCCGCATGCTTTA
         || | || ||| | ||| |||        ||  || | | |||||||| |  ||  |||| ||   | |     || |   ||  |||||||||  | ||||| || || || ||||| |||||||| || || |||  ||||||||||| ||| |||||||||||||| ||| |||| ||||| |||||
gtatatactgtgtaccttttatatttgttcaaacaactatatcaatctactttgtcattgctgctttttgtttactttccccccactttgtatgaccagGAGTAAGAAATGCAGCTCAGAGGAAGCTTTTGGATGAGCTTGGTATTGTTGCTGAAGATGTACCAGTTGATCAGTTCACCCCATTGGGTCGCATTCTTTA

upper sequence: Vv04s0023g00600.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT3G02780.1 (Arabidopsis thaliana), 3'ss of exon 4
--------------gtattccattttctttcttcttttggaatgccattatgctttgtcactatgacttttcttagttgtttgt-tcatt--cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTGCTGAAGATGCACCTGTTGATCAGTTCACTCCACTGGGCCGCATGCTTTA
              | |   || |||  | ||||||||    | | ||     |     ||| |  ||||||| |  |  |    ||| |   ||| | |||| ||| ||||||||||||||||||||||  | ||||| || || |||   |||||||||| ||| || ||| ||||||||||  |||| || ||||| ||
gtgggtatctactggcaaaacaatttagtacttctttt----tactatctatgtagaaaactgtagcttttctcaactagtgacctcactgttactcatcagGTGTGAGGAATGCTGCACAAAGAAAGCTTCTCGATGAGCTTGGTATTGTAGCTGAAGATGTACCAGTCGATGAGTTCACTCCCTTGGGACGTATGCTGTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71878369|gb|DT027424.1|DT027424
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|45771600|gb|CN007452.1|CN007452
EST:     ATCAGAGC-TA-TGATGAG-ATGCGC-TG                         GAGTGC-GAATGCTGCAC-AAGAAAGCTG-TGGATGAACTCGGCATTCCTG
genomic: ATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|110361442|gb|EC924912.1|EC924912
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|110405116|gb|EC970650.1|EC970650
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|110724888|gb|EE101111.1|EE101111
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|71857088|gb|DT006143.1|DT006143
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|349811100|gb|FQ406088.1|FQ406088
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|349827772|gb|FQ422640.1|FQ422640
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|83275115|gb|DV939211.1|DV939211
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|351018393|gb|FQ439205.1|FQ439205
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|161708900|gb|FC059646.1|FC059646
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCC
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCC
EST: gi|110691547|gb|EE069777.1|EE069777
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|110381312|gb|EC946638.1|EC946638
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|71858445|gb|DT007500.1|DT007500
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAAGAAAGCTGTTGGATGAACTCGGCATTCCT
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAA-GAAAGCTGTTGGATGAACTCGGCATTCCT
EST: gi|161714509|gb|FC062959.1|FC062959
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|71858250|gb|DT007305.1|DT007305
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|351030753|gb|FQ438591.1|FQ438591
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|351016449|gb|FQ423876.1|FQ423876
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|351014219|gb|FQ434808.1|FQ434808
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|110390835|gb|EC955766.1|EC955766
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|349816150|gb|FQ403646.1|FQ403646
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|349821590|gb|FQ408149.1|FQ408149
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|45771470|gb|CN007322.1|CN007322
EST:     GAGAATGCGCTT-                         GAGTGCGGAA-GCTGCACAAAGAAAGCTGTTGGA-GAACTCGGCATTCCTG
genomic: GAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|110383561|gb|EC947940.1|EC947940
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|27755317|gb|CB036072.1|CB036072
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|110721162|gb|EE097848.1|EE097848
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCNGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|110377835|gb|EC942928.1|EC942928
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|110381620|gb|EC934948.1|EC934948
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|110730975|gb|EE108667.1|EE108667
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|161714485|gb|FC064460.1|FC064460
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|45771217|gb|CN007069.1|CN007069
EST:     TTACCGTGAATCAGAGC-TATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: TTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|30303206|gb|CB980000.1|CB980000
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|349833009|gb|FQ416387.1|FQ416387
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|110384862|gb|EC949328.1|EC949328
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|351031443|gb|FQ446646.1|FQ446646
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATCGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|110390904|gb|EC955847.1|EC955847
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|110409935|gb|EC975610.1|EC975610
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|351017045|gb|FQ424472.1|FQ424472
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|45771365|gb|CN007217.1|CN007217
EST:     CAGCCATCCTC-TTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|352794136|gb|FQ479378.1|FQ479378
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|71859775|gb|DT008830.1|DT008830
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|110687512|gb|EE065008.1|EE065008
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|71863235|gb|DT012290.1|DT012290
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|37190401|gb|CF609750.1|CF609750
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|30303272|gb|CB980066.1|CB980066
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|110689856|gb|EE066444.1|EE066444
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|26264645|gb|CA815708.1|CA815708
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|37190678|gb|CF610027.1|CF610027
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|351049295|gb|FQ429038.1|FQ429038
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|110730593|gb|EE107853.1|EE107853
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|110384180|gb|EC948599.1|EC948599
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|161717400|gb|FC068871.1|FC068871
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|83276260|gb|DV940268.1|DV940268
EST:     CAGAGCTTA-TGATGAGAATGCGC-TG                         GAGTNGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCT
genomic: CAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGT-GCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCT
EST: gi|161713558|gb|FC064081.1|FC064081
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGC
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGC
EST: gi|349825950|gb|FQ415755.1|FQ415755
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTAGTGATGAAAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAA
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAA
EST: gi|161720991|gb|FC070700.1|FC070700
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|77580614|gb|DV219211.1|DV219211
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|71864567|gb|DT013622.1|DT013622
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCAC
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCAC
EST: gi|30305248|gb|CB982042.1|CB982042
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|351024079|gb|FQ423502.1|FQ423502
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|110421766|gb|EC988066.1|EC988066
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|110726293|gb|EE101950.1|EE101950
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|71873106|gb|DT022161.1|DT022161
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|110409938|gb|EC975613.1|EC975613
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|30321480|gb|CD004742.1|CD004742
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
EST: gi|351029622|gb|FQ427462.1|FQ427462
EST:     CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTG                         GAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG
genomic: CAGCCATCCTCTTTACCGTGAATCAGAGCTTATTGATGAGAATGCGCTTGgtattccatt ... cactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccattatgctttgtcactatgacttttcttagttgtttgttcattcactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTGCTGAAGATGCACCTGTTGATCAGTTCACTCCACTGGGCCGCATGCTTTA
                                       ttcattc  CT-rich tract
                       ttttctta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtattccattttctttcttcttttggaatgccattatgctttgtcactatgacttttcttagttgtttgttcattcactaaccagGAGTGCGGAATGCTGCACAAAGAAAGCTGTTGGATGAACTCGGCATTCCTGCTGAAGATGCACCTGTTGATCAGTTCACTCCACTGGGCCGCATGCTTTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG