Sequence
atgc intronic sequence ATGC exonic sequence...agggttgcttaagcaggccttatttgtaataatttttgttaccatttttttcctttctgatcttactatttatagttgattctattgcaatgtattgcagTTGGAATGCAACATATGAGAGTTTACTGGGGACCAACAAGCCTCTCCCCCAGCCTATCCCTCTCCCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g05460.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA04G07120.2 (Glycine max), 3'ss of exon 4
agggttgcttaagcaggccttatttgtaataatttttgttaccatttttttc-ctttctgatcttactatttatagttgattctattgcaat-gtattgcagTTGGAATGCAACATATGAGAGTTTACTGGGGACCAACAAGCCTCTCCCCCAGCCTATCCCTCTCCCT
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--aaatagggaattggtctatagctatagcattcaatccagggatcaaagtcacttttcaaaatgtttgtcaagttctaattctatagtttttgctttacagTTGGAATGCCACCTATGAGAGTCTAATGGGGACCAACAAGCCTTTTCCCCGGCCAATTCCTCTTGGA
upper sequence: Vv04s0008g05460.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA06G07210.2 (Glycine max), 3'ss of exon 3
agggttgcttaagcaggccttatttgtaataatttttgttaccatttttttcctttctgatcttactatttatagttgattctattgcaatgtatt-gcagTTGGAATGCAACATATGAGAGTTTACTGGGGACCAACAAGCCTCTCCCCCAGCCTATCCCTCTCCCT
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gaggtggaattggtctatat-agctatagcattcaatccagtgatcaaagtcactttcaaaatgtttgtcagattctaattctagagtttttgatttacagTTGGAATGCCACCTATGAGAGTCTAATGGGGACCAACAAGCCTTTTCACCGGCCAATTCCTCTTGGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttttcctttctgatcttactatttatagttgattctattgcaatgtattgcagTTGGAATGCAACATATGAGAGTTTACTGGGGACCAACAAGCCTCTCCCCCAGCCTATCCCTCTCCCT
atcttactatttata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agggttgcttaagcaggccttatttgtaataatttttgttaccatttttttcctttctgatcttactatttatagttgattctattgcaatgtattgcagTTGGAATGCAACATATGAGAGTTTACTGGGGACCAACAAGCCTCTCCCCCAGCCTATCCCTCTCCCT
- - - - - - gcaggcc
- - - - - - - - - - - - - - - - - - tgttacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctattgc