1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tactaatctttattacttgcttaatttcacttttttaacttatttatcatttttttcatatgaagaaactaaactgaagccatgactctgcaaactgtagGAAAGACAATGCTTATGGATATGTTTTATAGTGCTACTGAAGGAATTGTTAAACATCGAAGAAGGTTTCACTTTCATGAG
species | Vitis vinifera |
transcript | Vv04s0008g05270.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCCTCCTCCAGCTCCAAAAGGTTTATATTTGTATGGTAGTGTAGGAAGTG GAAAGACAATGCTTATGGATATGTTTTATAGTGAC-ACTGAAGGAATTGTTEST: gi|294966883|gb|GW839758.1|GW839758
genomic: TCCTCCTCCAGCTCCAAAAGGTTTATATTTGTATGGTAGTGTAGGAAGTGgtatgtttct ... caaactgtagGAAAGACAATGCTTATGGATATGTTTTATAGTG-CTACTGAAGGAATTGTT
EST: TCCTCCTCCAGCTCCAAAAGGTTTATATTTGTATGGTAGTGTAGGAAGTG GAAAGACAATGCTTATGGATATGTTTTATAGTGCCACTGAAGGAATTGTTAEST: gi|30252234|gb|CB969785.1|CB969785
genomic: TCCTCCTCCAGCTCCAAAAGGTTTATATTTGTATGGTAGTGTAGGAAGTGgtatgtttct ... caaactgtagGAAAGACAATGCTTATGGATATGTTTTATAGTGCTACTGAAGGAATTGTTA
EST: TCCTCCTCCAGCTCCAAAAGGTTTATATTTGTATGGTAGTGTAGGAAGTG GAAAGACAATGCTTATGGATATGTTTTATAGTGCCACTGAAGGAATTGTTA
genomic: TCCTCCTCCAGCTCCAAAAGGTTTATATTTGTATGGTAGTGTAGGAAGTGgtatgtttct ... caaactgtagGAAAGACAATGCTTATGGATATGTTTTATAGTGCTACTGAAGGAATTGTTA
atcatttttttcatatgaagaaactaaactgaagccatgactctgcaaactgtagGAAAGACAATGCTTATGGATATGTTTTATAGTGCTACTGAAGGAATTGTTAAACATCGAAGAAGGTTTCACTTTCATGAG
aactaaa putative branch site (score: 2)
ttttttcatatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactaatctttattacttgcttaatttcacttttttaacttatttatcatttttttcatatgaagaaactaaactgaagccatgactctgcaaactgtagGAAAGACAATGCTTATGGATATGTTTTATAGTGCTACTGAAGGAATTGTTAAACATCGAAGAAGGTTTCACTTTCATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - -tacttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgac