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...caaaatttttactaaaattcaccatgcctccaacccagtttcatacgccttttcaatttgttgcttacctatggattaatggttgatttttattctgcagGGTGGCGATTTCCTTAGACGAGATG
species | Vitis vinifera |
transcript | Vv04s0008g05090.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACTATAAAGGGTCCTTCTTCCATCGCATTATCAAAGGATCAATGGTTCAG GGTGGCGATTTCCTTAGACGAGATGEST: gi|34544006|gb|CF512238.1|CF512238
genomic: ACTATAAAGGGTCCTTCTTCCATCGCATTATCAAAGGATCAATGGTTCAGgtatgttttt ... tattctgcagGGTGGCGATTTCCTTAGACGAGATG
EST: ACTATAAAGGGTCCTTCTTCCATCGCATTATCAAAGGATCAATGGTTCAG GGTGGCGATTTCCTTAGACGAGATGEST: gi|30295674|gb|CB972468.1|CB972468
genomic: ACTATAAAGGGTCCTTCTTCCATCGCATTATCAAAGGATCAATGGTTCAGgtatgttttt ... tattctgcagGGTGGCGATTTCCTTAGACGAGATG
EST: ACTATAAAGGGTCCTTCTTCCATCGCATTATCAAAGGATCAATGGTTCAG GGTGGCGATTTCCTTAGACGAGATGEST: gi|352777331|gb|FQ473965.1|FQ473965
genomic: ACTATAAAGGGTCCTTCTTCCATCGCATTATCAAAGGATCAATGGTTCAGgtatgttttt ... tattctgcagGGTGGCGATTTCCTTAGACGAGATG
EST: ACTATAAAGGGTCCTTCTTCCATCGCATTATCAAAGGATCAATGGTTCAG GGTGGCGATTTCCTTAGACGAGATGEST: gi|34543917|gb|CF512149.1|CF512149
genomic: ACTATAAAGGGTCCTTCTTCCATCGCATTATCAAAGGATCAATGGTTCAGgtatgttttt ... tattctgcagGGTGGCGATTTCCTTAGACGAGATG
EST: ACTATAAAGGGTCCTTCTTCCATCGCATTATCAAAGGATCAATGGTTCAG GGTGGCGATTTCCTTAGACGAGATGEST: gi|34550009|gb|CF518241.1|CF518241
genomic: ACTATAAAGGGTCCTTCTTCCATCGCATTATCAAAGGATCAATGGTTCAGgtatgttttt ... tattctgcagGGTGGCGATTTCCTTAGACGAGATG
EST: ACTATAAAGGGTCCTTCTTCCATCGCATTATCAAAGGATCAATGGTTCAG GGTGGCGATTTCCTTAGACGAGATGEST: gi|34550884|gb|CF519098.1|CF519098
genomic: ACTATAAAGGGTCCTTCTTCCATCGCATTATCAAAGGATCAATGGTTCAGgtatgttttt ... tattctgcagGGTGGCGATTTCCTTAGACGAGATG
EST: ACTATAAAGGGTCCTTCTTCCATCGCATTATCAAAGGATCAATGGTTCAG GGTGGCGATTTCCTTAGACGAGATGEST: gi|352765311|gb|FQ466008.1|FQ466008
genomic: ACTATAAAGGGTCCTTCTTCCATCGCATTATCAAAGGATCAATGGTTCAGgtatgttttt ... tattctgcagGGTGGCGATTTCCTTAGACGAGATG
EST: ACTATAAAGGGTCCTTCTTCCATCGCATTATCAAAGGATCAATGGTTCAG GGTGGCGATTTCCTTAGACGAGATGEST: gi|26262030|gb|CA813093.1|CA813093
genomic: ACTATAAAGGGTCCTTCTTCCATCGCATTATCAAAGGATCAATGGTTCAGgtatgttttt ... tattctgcagGGTGGCGATTTCCTTAGACGAGATG
EST: ACTATAAAGGGTCCTTCTTCCATCGCATTATCAAAGGATCAATGGTTCAG GGTGGCGATTTCCTTAGACGAGATGEST: gi|352772302|gb|FQ469827.1|FQ469827
genomic: ACTATAAAGGGTCCTTCTTCCATCGCATTATCAAAGGATCAATGGTTCAGgtatgttttt ... tattctgcagGGTGGCGATTTCCTTAGACGAGATG
EST: ACTATAAAGGGTCCTTCTTCCATCGCATTATCAAAGGATCAATGGTTCAG GGTGGCGATTTCCTTAGACGAGATGEST: gi|110723917|gb|EE099287.1|EE099287
genomic: ACTATAAAGGGTCCTTCTTCCATCGCATTATCAAAGGATCAATGGTTCAGgtatgttttt ... tattctgcagGGTGGCGATTTCCTTAGACGAGATG
EST: ACTATAAAGGGTCCTTCTTCCATCGCATTATCAAAGGATCAATGGTTCAG GGTGGCGATTTCCTTAGACGAGATG
genomic: ACTATAAAGGGTCCTTCTTCCATCGCATTATCAAAGGATCAATGGTTCAGgtatgttttt ... tattctgcagGGTGGCGATTTCCTTAGACGAGATG
cgccttttcaatttgttgcttacctatggattaatggttgatttttattctgcagGGTGGCGATTTCCTTAGACGAGATG
tttttattct CT-rich tract
ttgatttttattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaaatttttactaaaattcaccatgcctccaacccagtttcatacgccttttcaatttgttgcttacctatggattaatggttgatttttattctgcagGGTGGCGATTTCCTTAGACGAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
caaaatt
- - - - - actaaaa
- - - - - - - - - - -ccatgcc
- - - - - - - - - - - - - - -ccaaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggttga