1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...caaagtattcatattcttccagaggtatctattcatgtttgtgtcccagattaatcctctcttcatatttgtgcctgtgatttgatcaatcgtcttgcttTCCAGGTAACTCTACAGATTTATTATGTTTCCATTTTATGATTAACAAGGAAGAGTTTCAAAGAATG
species | Vitis vinifera |
transcript | Vv04s0008g04400.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
ccagattaatcctctcttcatatttgtgcctgtgatttgatcaatcgtcttgcttTCCAGGTAACTCTACAGATTTATTATGTTTCCATTTTATGATTAACAAGGAAGAGTTTCAAAGAATG
tcttgctt CT-rich tract
ttcatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaagtattcatattcttccagaggtatctattcatgtttgtgtcccagattaatcctctcttcatatttgtgcctgtgatttgatcaatcgtcttgcttTCCAGGTAACTCTACAGATTTATTATGTTTCCATTTTATGATTAACAAGGAAGAGTTTCAAAGAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - tcttcca
- - - - - - - - - - - - - - - - tcatgtt
- - - - - - - - - - - - - - - - - - - - -tgtccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcctgt