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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgagtgaaaggcatcttgtctaacttcgttgttgtaccttgtgtttttaatttatggctgattttttctgtttgtttactttgcttgcttgggggatagCCCTGCTATTCAGGTGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTACCGGCTCATTGAGAGTTGGAGCTGAGTTTTTGGCGAGACATCATCACCAA

Basic information

species Vitis vinifera
transcript Vv04s0008g03770.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161712214|gb|FC061588.1|FC061588
EST:     CTGGCAGAATTCAATAAATTGAGTGCTAAGCTCATGTTTGGCGCTGACAG                         CCCTGCTATTCAGGTGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC
genomic: CTGGCAGAATTCAATAAATTGAGTGCTAAGCTCATGTTTGGCGCTGACAGgtacaagaac ... tgggggatagCCCTGCTATTCAGGTGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC
EST: gi|161714368|gb|FC063209.1|FC063209
EST:     CTGGCAGAATTCAATAAATTGAGTGCTAAGCTCATGTTTGGCGCTGACAG                         CCCTGCTATTCAGGTGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC
genomic: CTGGCAGAATTCAATAAATTGAGTGCTAAGCTCATGTTTGGCGCTGACAGgtacaagaac ... tgggggatagCCCTGCTATTCAGGTGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC
EST: gi|349822896|gb|FQ398283.1|FQ398283
EST:     CTGGCAGAATTCAATAAATTGAGTGCTAAGCTCATGTTTGGCGCTGACAG                         CCCTGCTATTCAGGAGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC
genomic: CTGGCAGAATTCAATAAATTGAGTGCTAAGCTCATGTTTGGCGCTGACAGgtacaagaac ... tgggggatagCCCTGCTATTCAGGTGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC
EST: gi|71860471|gb|DT009526.1|DT009526
EST:     CTGGCAGAATTCAATAAATTGAGTGCTAAACTCATGTTTGGCGCTGACAG                         CCCTGCTATTCAGGTGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC
genomic: CTGGCAGAATTCAATAAATTGAGTGCTAAGCTCATGTTTGGCGCTGACAGgtacaagaac ... tgggggatagCCCTGCTATTCAGGTGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC
EST: gi|161716869|gb|FC068115.1|FC068115
EST:     GTTTGGCGCTGACAG                         CCCTGCTATTCAGGAGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC
genomic: GTTTGGCGCTGACAGgtacaagaac ... tgggggatagCCCTGCTATTCAGGTGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC
EST: gi|349825792|gb|FQ423087.1|FQ423087
EST:     CTGGCAGAATTCAATAAATTGAGTGCTAAGCTCATGTTTGGCGCTGACAG                         CCCTGCTATTCAGGAGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC
genomic: CTGGCAGAATTCAATAAATTGAGTGCTAAGCTCATGTTTGGCGCTGACAGgtacaagaac ... tgggggatagCCCTGCTATTCAGGTGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC
EST: gi|161718975|gb|FC067020.1|FC067020
EST:     CTGGCAGAATTCAATAAATTGAGTGCTAAGCTCATGTTTGGCGCTGACAG                         CCCTGCTATTCAGGAGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC
genomic: CTGGCAGAATTCAATAAATTGAGTGCTAAGCTCATGTTTGGCGCTGACAGgtacaagaac ... tgggggatagCCCTGCTATTCAGGTGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC
EST: gi|351029008|gb|FQ435009.1|FQ435009
EST:     CTGGCAGAATTCAATAAATTGAGTGCTAAGCTCATGTTTGGCGCTGACAG                         CCCTGCTATTCAGGAGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC
genomic: CTGGCAGAATTCAATAAATTGAGTGCTAAGCTCATGTTTGGCGCTGACAGgtacaagaac ... tgggggatagCCCTGCTATTCAGGTGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC
EST: gi|110698493|gb|EE076055.1|EE076055
EST:     CTGGCAGAATTCAATAAATTGAGTGCTAAGCTCATGTTTGGCGCTGACAG                         CCCTGCTATTCAGGTGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC
genomic: CTGGCAGAATTCAATAAATTGAGTGCTAAGCTCATGTTTGGCGCTGACAGgtacaagaac ... tgggggatagCCCTGCTATTCAGGTGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC
EST: gi|110368860|gb|EC932986.1|EC932986
EST:     CTGGCAGAATTCAATAAATTGAGTGCTAAGCTCATGTTTGGCGCTGACAG                         CCCTGCTATTCAGGTGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC
genomic: CTGGCAGAATTCAATAAATTGAGTGCTAAGCTCATGTTTGGCGCTGACAGgtacaagaac ... tgggggatagCCCTGCTATTCAGGTGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC
EST: gi|110711178|gb|EE087421.1|EE087421
EST:     CTGGCAGAATTCAATAAATTGAGTGCTAAGCTCATGTTTGGCGCTGACAG                         CCCTGCTATTCAGGTGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC
genomic: CTGGCAGAATTCAATAAATTGAGTGCTAAGCTCATGTTTGGCGCTGACAGgtacaagaac ... tgggggatagCCCTGCTATTCAGGTGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC
EST: gi|71858885|gb|DT007940.1|DT007940
EST:     CTGGCAGAATTCAATAAATTGAGTGCTAAGCTCATGTTTGGCGCTGACAG                         CCCTGCTATTCAGGAGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC
genomic: CTGGCAGAATTCAATAAATTGAGTGCTAAGCTCATGTTTGGCGCTGACAGgtacaagaac ... tgggggatagCCCTGCTATTCAGGTGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC
EST: gi|33402572|gb|CF208199.1|CF208199
EST:     CTGGCAGAATTCAATAAATTGAGTGCTAAGCTCATGTTTGGCGCTGACAG                         CCCTGCTATTCAGGAGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC
genomic: CTGGCAGAATTCAATAAATTGAGTGCTAAGCTCATGTTTGGCGCTGACAGgtacaagaac ... tgggggatagCCCTGCTATTCAGGTGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC
EST: gi|71858293|gb|DT007348.1|DT007348
EST:     CTGGCAGAATTCAATAAATTGAGTGCTAAGCTCATGTTTGGCGCTGACAG                         CCCTGCTATTCAGGTGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC
genomic: CTGGCAGAATTCAATAAATTGAGTGCTAAGCTCATGTTTGGCGCTGACAGgtacaagaac ... tgggggatagCCCTGCTATTCAGGTGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC
EST: gi|349830105|gb|FQ420365.1|FQ420365
EST:     CTGGCAGAATTCAATAAATTGAGTGCTAAGCTCATGTTTGGCGCTGACAG                         CCCTGCTATTCAGGAGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC
genomic: CTGGCAGAATTCAATAAATTGAGTGCTAAGCTCATGTTTGGCGCTGACAGgtacaagaac ... tgggggatagCCCTGCTATTCAGGTGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC
EST: gi|29783169|gb|CB349167.2|CB349167
EST:     CTGGCAGAATTCAATAAATTGAGTGCTAAGCTCATGTTTGGCGCTGACAG                         CCCTGCTATTCAGGAGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC
genomic: CTGGCAGAATTCAATAAATTGAGTGCTAAGCTCATGTTTGGCGCTGACAGgtacaagaac ... tgggggatagCCCTGCTATTCAGGTGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC
EST: gi|30306042|gb|CB982836.1|CB982836
EST:     CTGGCAGAATTCAATAAATTGAGTGCTAAGCTCATGTTTGGCGCTGACAG                         CCCTGCTATTCAGGTGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC
genomic: CTGGCAGAATTCAATAAATTGAGTGCTAAGCTCATGTTTGGCGCTGACAGgtacaagaac ... tgggggatagCCCTGCTATTCAGGTGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttaatttatggctgattttttctgtttgtttactttgcttgcttgggggatagCCCTGCTATTCAGGTGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTACCGGCTCATTGAGAGTTGGAGCTGAGTTTTTGGCGAGACATCATCACCAA
                                       cttgctt  CT-rich tract
              tgatttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atgagtgaaaggcatcttgtctaacttcgttgttgtaccttgtgtttttaatttatggctgattttttctgtttgtttactttgcttgcttgggggatagCCCTGCTATTCAGGTGAAGAGGGTTACTACTGTCCAGTGTTTGTCTGGTACCGGCTCATTGAGAGTTGGAGCTGAGTTTTTGGCGAGACATCATCACCAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - -aaaggca
- - - - - - - - - - - - - - - - - -taccttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tggctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttgct