1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gcaggtttatacatgcatccatgctcgtgaaagttctcattcataactaagcatggcaatgtcttccaagtctgttcattcatttcctcttgttgatgcagGTTAGCAGAGGAATGAGGTTTATTGGGGGTGAAGCTGCAGCACTGAGCAGAGTAAATGAGTATTTCTGGAAGAAG
species | Vitis vinifera |
transcript | Vv04s0008g02670.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACTGGGGAAGCGTTCCTTCCATCGACCAGCTTGGACTCCATGAGGAAAAG GTTAGCAGAGGAATGAGGTTTATTGGGGGTGAAGCTGCAGCACTGAGCAGAEST: gi|77586218|gb|DV222205.1|DV222205
genomic: ACTGGGGAAGCGTTCCTTCCATCGACCAGCTTGGACTCCATGAGGAAAAGgcaggtttat ... gttgatgcagGTTAGCAGAGGAATGAGGTTTATTGGGGGTGAAGCTGCAGCACTGAGCAGA
EST: ACTGGGGAAGCGTTCCTTCCATCGACCAGCTTGGACTCCATGAGGAAAAG GTTAGCAGAGGAATGAGGTTTATTGGGGGTGAAGCTGCAGCACTGAGCAGAEST: gi|71871345|gb|DT020400.1|DT020400
genomic: ACTGGGGAAGCGTTCCTTCCATCGACCAGCTTGGACTCCATGAGGAAAAGgcaggtttat ... gttgatgcagGTTAGCAGAGGAATGAGGTTTATTGGGGGTGAAGCTGCAGCACTGAGCAGA
EST: ACTGGGGAAGCGTTCCTTCCATCGACCAGCTTGGACTCCATGAGGAAAAG GTTAGCAGAGGAATGAGGTTTATTGGGGGTGAAGCTGCAGCACTGAGCAGA
genomic: ACTGGGGAAGCGTTCCTTCCATCGACCAGCTTGGACTCCATGAGGAAAAGgcaggtttat ... gttgatgcagGTTAGCAGAGGAATGAGGTTTATTGGGGGTGAAGCTGCAGCACTGAGCAGA
ctaagcatggcaatgtcttccaagtctgttcattcatttcctcttgttgatgcagGTTAGCAGAGGAATGAGGTTTATTGGGGGTGAAGCTGCAGCACTGAGCAGAGTAAATGAGTATTTCTGGAAGAAG
tgttgat putative branch site (score: 4)
ttcatttcctcttgtt CT-rich tract
attcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaggtttatacatgcatccatgctcgtgaaagttctcattcataactaagcatggcaatgtcttccaagtctgttcattcatttcctcttgttgatgcagGTTAGCAGAGGAATGAGGTTTATTGGGGGTGAAGCTGCAGCACTGAGCAGAGTAAATGAGTATTTCTGGAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG